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ExportExons: Added option to report GENENAME_EXONNUMBER in bed file name column (-n). This allows you to use the resulting bed in the DRDS application.

PairedCondition: This was modified to support SAMseq, should have been included in last check-in

tmosbruger 2014-02-04

changed /trunk/Source/edu/utah/seq/analysis/multi/PairedCondition.java
changed /trunk/Source/util/bio/annotation/ExportExons.java
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