USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r207] by biotelerock Added latest apps.	2014-01-08 16:34:02	Tree
[r206] by biotelerock Latest mods for associating variants with splice junctions.	2014-01-08 16:32:36	Tree
[r205] by tmosbruger Added new MicrosatelliteCounter application. Made small changes to the BisSeqAggregatePlotter and Gr2Bar apps.	2014-01-06 18:49:20	Tree
[r204] by monkeymanstan Added an option to first call Picard's SortSam and MarkDuplicates	2014-01-06 18:17:11	Tree
[r203] by monkeymanstan Wrapper for Picard's MarkDuplicates	2014-01-06 18:02:18	Tree
[r202] by biotelerock Mods to STP to output just spliced alignments. Mods to VCFAnnotator to convert scores to pvalues. Mods to MiRNACorrelator to improve ggplot scripts.	2014-01-04 00:15:40	Tree
[r201] by monkeymanstan Added an option to first call Picard's SortSam and MarkDuplicates. This is a critical step in parsing bisulfite data, as the percentage of duplicate reads can be quite high!	2013-12-30 22:33:45	Tree
[r200] by biotelerock Added indel support to the VCFSpliceAnnotator	2013-12-30 22:08:30	Tree
[r199] by biotelerock * Added a catch to skip calculating stats on bins with only one value * Fixed bug with the ordering of the bins in the ggplot	2013-12-23 17:22:25	Tree
[r198] by biotelerock Added new SamSVFilter app to build	2013-12-20 17:21:53	Tree

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