USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r206] Maximize Restore History

Latest mods for associating variants with splice junctions.

Authored by: biotelerock 2014-01-08

Browse code at this revision

Parent: [r205]

Child: [r207]

changed	/trunk/Documentation/USeqDocumentation/applications.html
changed	/trunk/Documentation/USeqDocumentation/releaseNotes.txt
changed	/trunk/Source/edu/utah/seq/mes/MaxEntScanScore3.java
changed	/trunk/Source/edu/utah/seq/mes/MaxEntScanScore5.java
added	/trunk/Source/edu/utah/seq/vcf/splice/SpliceHit.java
added	/trunk/Source/edu/utah/seq/vcf/splice/SpliceJunction.java
added	/trunk/Source/edu/utah/seq/vcf/splice/UCSCGene.java
changed	/trunk/Source/edu/utah/seq/vcf/splice/VCFSpliceAnnotator.java
changed	/trunk/Source/util/bio/parsers/UCSCGeneModelTableReader.java
changed	/trunk/Source/util/gen/Num.java

/trunk/Documentation/USeqDocumentation/applications.html Diff Switch to side-by-side view

/trunk/Documentation/USeqDocumentation/releaseNotes.txt Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/mes/MaxEntScanScore3.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/mes/MaxEntScanScore5.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/splice/SpliceHit.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/splice/SpliceJunction.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/splice/UCSCGene.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/splice/VCFSpliceAnnotator.java Diff Switch to side-by-side view

/trunk/Source/util/bio/parsers/UCSCGeneModelTableReader.java Diff Switch to side-by-side view

/trunk/Source/util/gen/Num.java Diff Switch to side-by-side view