USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r203] by monkeymanstan Wrapper for Picard's MarkDuplicates	2014-01-06 18:02:18	Tree
[r202] by biotelerock Mods to STP to output just spliced alignments. Mods to VCFAnnotator to convert scores to pvalues. Mods to MiRNACorrelator to improve ggplot scripts.	2014-01-04 00:15:40	Tree
[r201] by monkeymanstan Added an option to first call Picard's SortSam and MarkDuplicates. This is a critical step in parsing bisulfite data, as the percentage of duplicate reads can be quite high!	2013-12-30 22:33:45	Tree
[r200] by biotelerock Added indel support to the VCFSpliceAnnotator	2013-12-30 22:08:30	Tree
[r199] by biotelerock * Added a catch to skip calculating stats on bins with only one value * Fixed bug with the ordering of the bins in the ggplot	2013-12-23 17:22:25	Tree
[r198] by biotelerock Added new SamSVFilter app to build	2013-12-20 17:21:53	Tree
[r197] by biotelerock	2013-12-20 17:19:48	Tree
[r196] by biotelerock Backed out Darrens changes until these are optional	2013-12-20 17:16:28	Tree
[r195] by tmosbruger	2013-12-18 00:00:59	Tree
[r194] by tmosbruger MultiSampleVCFFilter: Bug fix, the behavior of -M was incorrect.	2013-12-16 17:32:59	Tree

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