USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r200] Maximize Restore History

Added indel support to the VCFSpliceAnnotator

Authored by: biotelerock 2013-12-30

Browse code at this revision

Parent: [r199]

Child: [r201]

changed	/trunk/Source/edu/utah/seq/mes/MaxEntScanScore3.java
changed	/trunk/Source/edu/utah/seq/mes/MaxEntScanScore5.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFComparator.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFMerger.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFParser.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFRecord.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFSpliceAnnotator.java
changed	/trunk/Source/util/bio/parsers/UCSCGeneLine.java

/trunk/Source/edu/utah/seq/mes/MaxEntScanScore3.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/mes/MaxEntScanScore5.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFComparator.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFMerger.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFRecord.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFSpliceAnnotator.java Diff Switch to side-by-side view

/trunk/Source/util/bio/parsers/UCSCGeneLine.java Diff Switch to side-by-side view