USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r184] Maximize Restore History

Added support for David's best practices to TomatoFamer. See 'exome_best'

Authored by: tmosbruger 2013-12-02

Browse code at this revision

Parent: [r183]

Child: [r185]

changed	/trunk/Source/edu/utah/seq/data/CalculatePerCycleErrorRate.java
changed	/trunk/Source/edu/utah/tomato/TFCommand.java
changed	/trunk/Source/edu/utah/tomato/TFCommandExomeAlign.java
changed	/trunk/Source/edu/utah/tomato/TFCommandExomeMetrics.java
changed	/trunk/Source/edu/utah/tomato/TFCommandExomeVariant.java
changed	/trunk/Source/edu/utah/tomato/TFConstants.java
changed	/trunk/Source/edu/utah/tomato/TFSampleInfo.java
changed	/trunk/Source/edu/utah/tomato/TomatoFarmer.java

/trunk/Source/edu/utah/seq/data/CalculatePerCycleErrorRate.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommand.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandExomeAlign.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandExomeMetrics.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandExomeVariant.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFConstants.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFSampleInfo.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TomatoFarmer.java Diff Switch to side-by-side view