USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r178] Maximize Restore History

Added Java implementations of Yeo and Burge's Max Ent Scan algorithms for human splice site detection

Authored by: biotelerock 2013-11-08

Browse code at this revision

Parent: [r177]

Child: [r179]

added	/trunk/Documentation/USeqDocumentation/splicemodels
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc1
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc2
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc3
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc4
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc5
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc6
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc7
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc8
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x3acc9
added	/trunk/Documentation/USeqDocumentation/splicemodels/me2x5
added	/trunk/Documentation/USeqDocumentation/splicemodels/splice5sequences
added	/trunk/Source/edu/utah/seq/mes
added	/trunk/Source/edu/utah/seq/mes/MaxEntScanScore3.java
added	/trunk/Source/edu/utah/seq/mes/MaxEntScanScore5.java
changed	/trunk/build.properties

/trunk/Documentation/USeqDocumentation/splicemodels

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/trunk/Documentation/USeqDocumentation/splicemodels/me2x5 Diff Switch to side-by-side view

/trunk/Documentation/USeqDocumentation/splicemodels/splice5sequences Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/mes

Directory.

/trunk/Source/edu/utah/seq/mes/MaxEntScanScore3.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/mes/MaxEntScanScore5.java Diff Switch to side-by-side view

/trunk/build.properties Diff Switch to side-by-side view