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SRAProcessor

* Added option to set quality score offset to 64, needed for some Illumina datasets
MiRNACorrelator
* Added ggplot2 box whisker plot functionality

biotelerock 2013-11-06

changed /trunk/Documentation/USeqDocumentation/releaseNotes.txt
removed /trunk/Source/edu/expr/MiRNA.java
changed /trunk/Source/edu/expr/MiRNACorrelator.java
removed /trunk/Source/edu/expr/ParseMiRNATable.java
changed /trunk/Source/util/bio/parsers/SRAProcessor.java
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