*Remove hard-coded paths to software and added them to the config file. I don't like a user-specified config file... I need to come up with a better solution
*Changed the names of the output VCF files, 'filtered' and 'passing' was too cryptic. Files are now 'filterFieldSetAll' and 'filterFieldSetPassing', much clearer?
*Merged 'primary' and 'padded' target bed file and added AgilentV5UTR to list.
