USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r169] by tmosbruger TomatoFarmer Update	2013-11-02 00:06:08	Tree
[r168] by monkeymanstan 1. Fixed soft-linking of 101bp paired-end RNA-Seq data 2. Added updated alignments params for 101bp paired-end RNA-Seq data 3. Updated sequencing application codes to include new applications and removed outdated ones 4. Updated miRNA alignment params 5. Removed code to make the QC, processedAlignments, and coverageTracks dirs in GNomEx, as it appears that most users delete them and make their own 6. Changed dir path of tomato/job/ to /tomato/dev/job/ to work with Tomato3 7. Changed path of autoalignerData to /tomato/dev/job/autoaligner/autoalignerData/ 8. Changed path of apps to /tomato/dev/job/autoaligner/apps/ 9. Changed the number of lines in each split bisulfite fastq file to cut down on file #	2013-10-24 13:54:44	Tree
[r167] by biotelerock Latest comments	2013-10-15 16:25:48	Tree
[r166] by biotelerock Added catch to rename broken useq archives so these are skipped in subsequent autoconversion	2013-10-15 16:24:37	Tree
[r165] by biotelerock Added catch for fetching last bases from an array of regions	2013-10-15 16:23:29	Tree
[r164] by biotelerock Updated apps to work with kingspeak cluster and use rsync for all transfers	2013-10-15 16:23:13	Tree
[r163] by biotelerock Added catch for fetching last bases from an array of regions	2013-10-15 16:22:32	Tree
[r162] by biotelerock Added debugging info to parsing output	2013-10-15 16:21:34	Tree
[r161] by biotelerock Removed a requirement that non paired analysis contain matching t vc samples	2013-10-15 16:20:03	Tree
[r160] by biotelerock Removed a requirement that non paired analysis contain matching t vc samples	2013-10-15 16:19:49	Tree

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