USeq Source Code

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Commit [r169] Maximize Restore History

TomatoFarmer Update

Authored by: tmosbruger 2013-11-02

Browse code at this revision

Parent: [r168]

Child: [r170]

changed	/trunk/Source/edu/utah/seq/vcf/VCFAnnotator.java
changed	/trunk/Source/edu/utah/seq/vcf/VCFSample.java
changed	/trunk/Source/edu/utah/tomato/TFCommand.java
removed	/trunk/Source/edu/utah/tomato/TFCommandBisulfite.java
changed	/trunk/Source/edu/utah/tomato/TFCommandExomeAlign.java
changed	/trunk/Source/edu/utah/tomato/TFCommandExomeMetrics.java
renamed	/trunk/Source/edu/utah/tomato/TFCommandExomeVariantRaw.java -> /trunk/Source/edu/utah/tomato/TFCommandExomeVariant.java
changed	/trunk/Source/edu/utah/tomato/TFConstants.java
changed	/trunk/Source/edu/utah/tomato/TFLogger.java
changed	/trunk/Source/edu/utah/tomato/TFSampleInfo.java
changed	/trunk/Source/edu/utah/tomato/TFThread.java
changed	/trunk/Source/edu/utah/tomato/TFThreadDaemon.java
changed	/trunk/Source/edu/utah/tomato/TomatoFarmer.java
added	/trunk/Source/edu/utah/tomato/old

/trunk/Source/edu/utah/seq/vcf/VCFAnnotator.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/vcf/VCFSample.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommand.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandBisulfite.java

File was removed.

/trunk/Source/edu/utah/tomato/TFCommandExomeAlign.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandExomeMetrics.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandExomeVariantRaw.java to /trunk/Source/edu/utah/tomato/TFCommandExomeVariant.java

File was renamed.

/trunk/Source/edu/utah/tomato/TFConstants.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFLogger.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFSampleInfo.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFThread.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFThreadDaemon.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TomatoFarmer.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/old

Directory.