Added catch for fetching last bases from an array of regions
Updated apps to work with kingspeak cluster and use rsync for all transfers
Added debugging info to parsing output
Removed a requirement that non paired analysis contain matching t vc samples
Bug fix to block genes with excessive counts from deseq analysis
Mods for new apps
New app for associating miRNA expression with target gene expression values
Bunch of edits to TomatoFarmer
