USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r162] by biotelerock Added debugging info to parsing output	2013-10-15 16:21:34	Tree
[r161] by biotelerock Removed a requirement that non paired analysis contain matching t vc samples	2013-10-15 16:20:03	Tree
[r160] by biotelerock Removed a requirement that non paired analysis contain matching t vc samples	2013-10-15 16:19:49	Tree
[r159] by biotelerock Bug fix to block genes with excessive counts from deseq analysis	2013-10-15 16:19:25	Tree
[r158] by biotelerock Mods for new apps	2013-10-15 16:18:32	Tree
[r157] by biotelerock New app for associating miRNA expression with target gene expression values	2013-10-15 16:16:58	Tree
[r156] by tmosbruger Bunch of edits to TomatoFarmer	2013-09-30 23:05:10	Tree
[r155] by monkeymanstan 1. Fixed alignments params for small RNAs to allow for >1 mismatch, including homopolymer filtering. 2. Now specifying small RNA read adapter from sequencing report, not the one reported on the sequencing Bioinfo wiki	2013-09-17 21:32:13	Tree
[r154] by biotelerock Removed some debugging statements from STP Corrected a bug that was causing USeq2UCSCBig to error out when working with stranded bed files in some cases.	2013-09-12 19:49:43	Tree
[r153] by biotelerock ExportExons * Added name score and strand to the output DefinedRegionDifferentialSeq * Fixed a bug where genes with excessive counts were still being included in the DESeq analysis USeq2UCSCBig * Added a sandbox to the UCSC executables to limit memory and time on linux systems	2013-09-11 21:58:51	Tree

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