USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r157] by biotelerock New app for associating miRNA expression with target gene expression values	2013-10-15 16:16:58	Tree
[r156] by tmosbruger Bunch of edits to TomatoFarmer	2013-09-30 23:05:10	Tree
[r155] by monkeymanstan 1. Fixed alignments params for small RNAs to allow for >1 mismatch, including homopolymer filtering. 2. Now specifying small RNA read adapter from sequencing report, not the one reported on the sequencing Bioinfo wiki	2013-09-17 21:32:13	Tree
[r154] by biotelerock Removed some debugging statements from STP Corrected a bug that was causing USeq2UCSCBig to error out when working with stranded bed files in some cases.	2013-09-12 19:49:43	Tree
[r153] by biotelerock ExportExons * Added name score and strand to the output DefinedRegionDifferentialSeq * Fixed a bug where genes with excessive counts were still being included in the DESeq analysis USeq2UCSCBig * Added a sandbox to the UCSC executables to limit memory and time on linux systems	2013-09-11 21:58:51	Tree
[r152] by biotelerock Fixed issue when running a no replica analysis that caused DESeq to error out.	2013-09-05 18:15:10	Tree
[r151] by biotelerock updated to USeq_8.6.6	2013-09-05 16:55:51	Tree
[r150] by biotelerock Merged docs with Tim's DRDS bug fix	2013-09-05 15:12:53	Tree
[r149] by biotelerock Modified output to a table instead of multi line	2013-09-05 15:06:19	Tree
[r148] by biotelerock Switched flag back to deleting temp files	2013-09-05 15:05:35	Tree

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