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Commit [r154]  Maximize  Restore  History

Removed some debugging statements from STP

Corrected a bug that was causing USeq2UCSCBig to error out when working with stranded bed files in some cases.

biotelerock 2013-09-12

changed /trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java
changed /trunk/Source/edu/utah/seq/useq/USeqArchive.java
changed /trunk/Source/edu/utah/seq/useq/apps/USeq2UCSCBig.java
changed /trunk/Source/edu/utah/seq/useq/data/RegionScoreTextData.java
/trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java Diff Switch to side-by-side view
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/trunk/Source/edu/utah/seq/useq/USeqArchive.java Diff Switch to side-by-side view
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/trunk/Source/edu/utah/seq/useq/apps/USeq2UCSCBig.java Diff Switch to side-by-side view
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/trunk/Source/edu/utah/seq/useq/data/RegionScoreTextData.java Diff Switch to side-by-side view
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