USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r153] Maximize Restore History

ExportExons

* Added name score and strand to the output
DefinedRegionDifferentialSeq
* Fixed a bug where genes with excessive counts were still being included in the DESeq analysis
USeq2UCSCBig
* Added a sandbox to the UCSC executables to limit memory and time on linux systems

Authored by: biotelerock 2013-09-11

Browse code at this revision

Parent: [r152]

Child: [r154]

changed	/trunk/Documentation/USeqDocumentation/releaseNotes.txt
added	/trunk/Misc/timeout.pl
changed	/trunk/Source/edu/utah/seq/analysis/DefinedRegionDifferentialSeq.java
changed	/trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java
changed	/trunk/Source/edu/utah/seq/useq/apps/USeq2UCSCBig.java
changed	/trunk/Source/util/bio/annotation/ExportExons.java

USeq Source Code

Commit [r153] Maximize Restore History

/trunk/Documentation/USeqDocumentation/releaseNotes.txt Diff Switch to side-by-side view

/trunk/Misc/timeout.pl Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/DefinedRegionDifferentialSeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/useq/apps/USeq2UCSCBig.java Diff Switch to side-by-side view

/trunk/Source/util/bio/annotation/ExportExons.java Diff Switch to side-by-side view