USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Source Code Commit Log

Commit	Date
[r130] by biotelerock Added back in apps that we're compiling to the build props.	2013-06-24 16:00:23	Tree
[r129] by biotelerock RNAEditingScanSeqs * Added a minimum base fraction edited option to app to restrict what base observations are allowed into the analysis. RNAEditingPileUpParser * Fixed a bug where the parser was counting all of the reference reads (both plus and minus) when scoring a base for editing instead of just reads mapping to the matched strand when a stranded parsing was selected.	2013-06-24 15:55:53	Tree
[r128] by biotelerock Added an option to reset the maximum alignment score, needed for parsing Evan Johnson's gnumap alignments.	2013-06-24 15:55:04	Tree
[r127] by tmosbruger Fixed error that broke ant script	2013-06-20 18:08:05	Tree
[r126] by tmosbruger First TomatoFarmer check-in.	2013-06-20 16:38:59	Tree
[r125] by biotelerock Lots of mods related to adding edgeR functionality into Defined Region Diff Seq	2013-06-20 15:13:37	Tree
[r124] by biotelerock Added ability to work on a directory of files	2013-06-20 15:12:19	Tree
[r123] by biotelerock New apps imported from Picard and modified for extracting intenstiy info from CIF files	2013-06-20 15:11:24	Tree
[r122] by biotelerock updated sam and picard jars	2013-06-20 15:09:52	Tree
[r121] by biotelerock updated sam and picard jars	2013-06-20 15:09:31	Tree

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