USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r126] Maximize Restore History

First TomatoFarmer check-in.

Authored by: tmosbruger 2013-06-20

Browse code at this revision

Parent: [r125]

Child: [r127]

changed	/trunk/Source/edu/utah/seq/data/CalculatePerCycleErrorRate.java
added	/trunk/Source/edu/utah/tomato
added	/trunk/Source/edu/utah/tomato/StringPattern.java
added	/trunk/Source/edu/utah/tomato/TFCommand.java
added	/trunk/Source/edu/utah/tomato/TFCommandExomeAlign.java
added	/trunk/Source/edu/utah/tomato/TFCommandExomeMetrics.java
added	/trunk/Source/edu/utah/tomato/TFCommandExomeVariantRaw.java
added	/trunk/Source/edu/utah/tomato/TFConstants.java
added	/trunk/Source/edu/utah/tomato/TFLogger.java
added	/trunk/Source/edu/utah/tomato/TFSampleInfo.java
added	/trunk/Source/edu/utah/tomato/TFThread.java
added	/trunk/Source/edu/utah/tomato/TFThreadDaemon.java
added	/trunk/Source/edu/utah/tomato/TomatoFarmer.java
changed	/trunk/build.properties

/trunk/Source/edu/utah/seq/data/CalculatePerCycleErrorRate.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato

Directory.

/trunk/Source/edu/utah/tomato/StringPattern.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommand.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandExomeAlign.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandExomeMetrics.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFCommandExomeVariantRaw.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFConstants.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFLogger.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFSampleInfo.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFThread.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TFThreadDaemon.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/tomato/TomatoFarmer.java Diff Switch to side-by-side view

/trunk/build.properties Diff Switch to side-by-side view