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Modified app to gzip temp files and when a header is provided to directly write out the results without an intermediate file. Should cut down on disk usage.

biotelerock 2013-05-01

changed /trunk/Documentation/USeqDocumentation/releaseNotes.txt
changed /trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java
changed /trunk/Source/util/gen/Gzipper.java
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