USeq Source Code

Brought to you by: biotelerock, bmilash, elainegee, scourdy, tmosbruger

Commit [r104] Maximize Restore History

Added option -b to both SamTranscriptomeParser and RNASeq. This option flips the strand of both reads. Note that this is independent of the flip second strand option, selecting both will leave the second strand read unchanged.

Authored by: tmosbruger 2013-04-24

Browse code at this revision

Parent: [r103]

Child: [r105]

changed	/trunk/Documentation/USeqDocumentation/releaseNotes.txt
changed	/trunk/Source/edu/utah/seq/analysis/RNASeq.java
changed	/trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java

USeq Source Code

Commit [r104] Maximize Restore History

/trunk/Documentation/USeqDocumentation/releaseNotes.txt Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/analysis/RNASeq.java Diff Switch to side-by-side view

/trunk/Source/edu/utah/seq/parsers/SamTranscriptomeParser.java Diff Switch to side-by-side view