[Useq-users] Novoalign and corrupted gzip fastq files

[David N. <Dav...@hc...>]

OK Folks,

Just a heads up.

For all novoalign runs,  run a gunzip -t on each xxx.txt.gz file before aligning.  Novoalign silently completes its run but truncates the output when aligning a broken file. This is a very nasty bug and has/ is causing us no end of problems.  We also strongly recommend using rsync or FDT when transferring all of your data files.  

-cheers, Dave

-- 
David Austin Nix, PhD
Huntsman Cancer Institute
Dept. OncSci University of Utah
Bioinformatics Shared Resource
HCI 3165 (801) 587-4611
dav...@hc...