Re: [Useq-users] EnrichedRegionMaker Error

[David N. <dav...@gm...>]

Hello Richard, 

Would you mind running the app without the -s and -I options and have it
print out the indexes for this swi file?

 "java -Xmx7G -jar /Applications/USeq_7.9.3/Apps/EnrichedRegionMaker -f
/Users/bakerr/Desktop/Useq/MRSS2/binaryWindowData.swi.zip"

-cheers, D

On 10/25/11 1:45 PM, "Baker, Richard" <Ric...@um...> wrote:

>EnrichedRegionMaker consistently throws the following error when I try to
>process an xxx.swi file produced by MultipleReplicaScanSeqs:
>
>*********** 10/25/2011 03:30:37 PM ***********
>java -Xmx7G -jar /Applications/USeq_7.9.3/Apps/EnrichedRegionMaker -f
>/Users/bakerr/Desktop/Useq/MRSS2/binaryWindowData.swi.zip -s 20,20,1 -i
>1,2,4 -t 
>/Users/bakerr/Desktop/Useq/s2s7ChIPSeq/DupFiltPointData/TreatmentPointData
>/Rep0 -c 
>/Users/bakerr/Desktop/Useq/s2s7ChIPSeq/DupFiltPointData/ControlPointData/R
>ep0 
>
>
>Launching...
>25	Sub Window Size
>
>Processing binaryWindowData.swi.zip...
>	400	Max gap 
>
>Error: max score index is greater than the number of scores!
>
>ERM runs fine if called through ChIPSeq using the raw alignment files.
>What's up?
>
>--------------------------------------------------------------------------
>----
>The demand for IT networking professionals continues to grow, and the
>demand for specialized networking skills is growing even more rapidly.
>Take a complimentary Learning@Cisco Self-Assessment and learn
>about Cisco certifications, training, and career opportunities.
>http://p.sf.net/sfu/cisco-dev2dev
>_______________________________________________
>Useq-users mailing list
>Use...@li...
>https://lists.sourceforge.net/lists/listinfo/useq-users