[Useq-users] EnrichedRegionMaker Error

[Baker, R. <Ric...@um...>]

EnrichedRegionMaker consistently throws the following error when I try to process an xxx.swi file produced by MultipleReplicaScanSeqs:

*********** 10/25/2011 03:30:37 PM ***********
java -Xmx7G -jar /Applications/USeq_7.9.3/Apps/EnrichedRegionMaker -f /Users/bakerr/Desktop/Useq/MRSS2/binaryWindowData.swi.zip -s 20,20,1 -i 1,2,4 -t /Users/bakerr/Desktop/Useq/s2s7ChIPSeq/DupFiltPointData/TreatmentPointData/Rep0 -c /Users/bakerr/Desktop/Useq/s2s7ChIPSeq/DupFiltPointData/ControlPointData/Rep0 


Launching...
25	Sub Window Size

Processing binaryWindowData.swi.zip...
	400	Max gap 

Error: max score index is greater than the number of scores!

ERM runs fine if called through ChIPSeq using the raw alignment files.  What's up?