[Useq-users] RNA-seq data - Identification of enriched regions

[Myrto K. <kos...@gm...>]

Hi,
I have RNA-seq data (76bp paired-end) of a single cell type and would like
to identify regions that are transcribed but are not annotated (e.g. novel
exons).

My alignments are in BAM format and come from GSNAP.

Can I perform such analysis using USeq?

Any help would be much appreciated.

Thanks,
M

-- 
Myrto Areti Kostadima
EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge
CB10 1SD
UK