Re: [Useq-users] USeq Input Question

[David N. <dav...@gm...>]

Hello Radhouane,

Take a look at the user guide.  It details what data format (PointData) is
needed for running these apps.

http://useq.sourceforge.net/usage.html

-cheers, D

From:  Radhouane Aniba <ar...@gm...>
Date:  Mon, 17 Oct 2011 08:33:25 -0700
To:  <use...@li...>
Subject:  [Useq-users] USeq Input Question

Hello USeq users,

I am new to this package, I am giving it a try but some information are not
that clear for me.

I am interested in the app MultiplReplicateScanSeqs for Chip-Seq data
analysis and reading the documentation I noticed that example

java -Xmx4G -jar pathTo/USeq/Apps/ScanSeqs -t
      /Data/PolIIRep1/,/Data/PolIIRep2/ -c /Data/Input1/,Data/Input2/ -s
      /Data/PolIIResults -w 200 -p 100 -f -g 5
Although it looks obvious, there is no indication on the input format, what
kind of input format this program uses, I have replicates input as bed
files, and a single Input file for both of them

Thanks for your help

Radhouane


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