[Useq-users] USeq Input Question

[Radhouane A. <ar...@gm...>]

Hello USeq users,

I am new to this package, I am giving it a try but some information are not
that clear for me.

I am interested in the app MultiplReplicateScanSeqs for Chip-Seq data
analysis and reading the documentation I noticed that example

java -Xmx4G -jar pathTo/USeq/Apps/ScanSeqs -t
      /Data/PolIIRep1/,/Data/PolIIRep2/ -c /Data/Input1/,Data/Input2/ -s
      /Data/PolIIResults -w 200 -p 100 -f -g 5

Although it looks obvious, there is no indication on the input format, what
kind of input format this program uses, I have replicates input as bed
files, and a single Input file for both of them

Thanks for your help

Radhouane