[Useq-users] error in ScanSeqs

[Noboru Jo S. <ns...@uc...>]

    Hi David, I sent a message to the list from my other email, you can 
ignore it.
    I was getting this error from ScanSeqs, but I found the culprit. It 
seems that, sometimes, random chr cause this error. It may be because 
treatment/control don't have a random chr and ScanSeqs can't find the 
data to pair and crashes.


Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 0
   at edu.utah.seq.data.PointData.combinePointData(PointData.java:1142)
   at edu.utah.seq.data.PointData.combinePointData(PointData.java:1129)
   at 
edu.utah.seq.analysis.ScanSeqs.subSamplePointDataForEmpFDR(ScanSeqs.java:670) 

   at 
edu.utah.seq.analysis.ScanSeqs.calculateBinomialPValsForEmpiricalFDRs(ScanSeqs.java:568) 

   at 
edu.utah.seq.analysis.ScanSeqs.windowScanChromosome(ScanSeqs.java:278)
   at edu.utah.seq.analysis.ScanSeqs.scan(ScanSeqs.java:126)
   at edu.utah.seq.analysis.ScanSeqs.<init>(ScanSeqs.java:107)
   at edu.utah.seq.analysis.ScanSeqs.main(ScanSeqs.java:1307)