[Useq-users] summit position in USeq output?

[Sonja A. <son...@go...>]

Hello!

I have been looking at the output files of the ChipSeq applications and I
couldnt find a summit position (= maximal pileup of reads). Also as it is a
window approach I guess there is no such thing? Would it be correct then to
use the center of the best sub windows in the corresponding gff file? BTW
are these also sorted according to the significance of a peak?
I want to look for motifs in the 100bp region underlying the summit of
peaks, that's why I need this position of reference....

Thanks in advance!
Sonja