i just made a script to remove the duped frequencies after running tvtime-scanner again after the first config... i have to do this to see the new channels that my operator adds or changes.
its very simple, but might be useful for others.
ideally tvtime-scanner shouldnt dupe a already existent entry, but with this there is a easy fix
the script is also in http://caravela.homelinux.net/~higuita/extra/remove-tv-dupes.sh
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