I submitted a patch to do that back in February on the sourceforge
patches thingy.
http://sourceforge.net/tracker/index.php?func=detail&aid=1432483&group_id=34443&atid=411030
Saves the options selected on the screen to
$HOME/.tuxmathrc when they are set, and loads them on
startup.
Command line options take precedence over the saved
options.
Tested on Linux, not on Windows but I've made an attempt. [to make it
work on windows]
--
Andrew
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