Recent changes to UPDATES

UPDATES modified by Shestopalov Lab

Shestopalov Lab — Mon, 17 Feb 2014 16:52:42 -0000

UPDATES modified by Shestopalov Lab

Shestopalov Lab — Mon, 17 Feb 2014 16:52:41 -0000

--- v1
+++ v2
@@ -1,7 +1,7 @@
 Version 1.0.1:
 1. Bugfix for default cutoffset for those parameters, that appear missing from the properties.xml, which caused a null pointer exception
 2. The algorithm is slightly corrected: step 4 [1] was corrected to
-"see if the lower e-valued hit has the same taxonomy and rank. If yes - skip, else - see if the hit's taxonomy is "a parent" to that of the pivotal hit. if yes - skip, else - perform a statisitcal test".
+"see if the lower e-valued hit has the same taxonomy and rank. If yes - skip, else - see if the hit's taxonomy is "a parent" to that of the pivotal hit. if yes - skip, else - perform a statistical test".

 1: Tuzhikov A, Panchin A, Shestopalov VI. TUIT, a BLAST-based tool for taxonomic 
 classification of nucleotide sequences. Biotechniques. 2014 Feb 1;56(2):78-84.

UPDATES modified by Shestopalov Lab

Shestopalov Lab — Mon, 17 Feb 2014 16:52:17 -0000

Version 1.0.1:
1. Bugfix for default cutoffset for those parameters, that appear missing from the properties.xml, which caused a null pointer exception
2. The algorithm is slightly corrected: step 4 [1] was corrected to
"see if the lower e-valued hit has the same taxonomy and rank. If yes - skip, else - see if the hit's taxonomy is "a parent" to that of the pivotal hit. if yes - skip, else - perform a statisitcal test".

1: Tuzhikov A, Panchin A, Shestopalov VI. TUIT, a BLAST-based tool for taxonomic
classification of nucleotide sequences. Biotechniques. 2014 Feb 1;56(2):78-84.
doi: 10.2144/000114135. eCollection 2014. PubMed PMID: 24502797.