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File Date Author Commit
 autom4te.cache 2013-08-26 Euncheon Lim Euncheon Lim [8c49fb] Trowel v. 0.11
 m4 2013-08-26 Euncheon Lim Euncheon Lim [2a2521] trowel0.11
 src 2013-10-25 Euncheon Lim Euncheon Lim [052653] Trowel 1.0.3
 COPYING 2013-07-26 Euncheon Lim Euncheon Lim [2116ba] Add license
 Makefile 2013-08-26 Euncheon Lim Euncheon Lim [8c49fb] Trowel v. 0.11
 Makefile.am 2013-08-26 Euncheon Lim Euncheon Lim [8c49fb] Trowel v. 0.11
 Makefile.in 2013-08-26 Euncheon Lim Euncheon Lim [8c49fb] Trowel v. 0.11
 NOTICE 2013-10-25 Euncheon Lim Euncheon Lim [052653] Trowel 1.0.3
 README 2013-10-25 Euncheon Lim Euncheon Lim [052653] Trowel 1.0.3
 aclocal.m4 2013-08-26 Euncheon Lim Euncheon Lim [8c49fb] Trowel v. 0.11
 config.h 2013-08-26 Euncheon Lim Euncheon Lim [2a2521] trowel0.11
 config.h.in 2013-08-26 Euncheon Lim Euncheon Lim [2a2521] trowel0.11
 config.log 2013-08-26 Euncheon Lim Euncheon Lim [8c49fb] Trowel v. 0.11
 config.status 2013-08-26 Euncheon Lim Euncheon Lim [8c49fb] Trowel v. 0.11
 configure 2013-08-26 Euncheon Lim Euncheon Lim [8c49fb] Trowel v. 0.11
 configure.ac 2013-08-26 Euncheon Lim Euncheon Lim [7913c0] Merge branch 'master' of ssh://git.code.sf.net/...
 depcomp 2013-07-26 EunCheon Lim EunCheon Lim [ccf6e1] Initial commit
 install-sh 2013-07-26 EunCheon Lim EunCheon Lim [ccf6e1] Initial commit
 missing 2013-07-26 EunCheon Lim EunCheon Lim [ccf6e1] Initial commit
 stamp-h1 2013-07-26 EunCheon Lim EunCheon Lim [ccf6e1] Initial commit

Read Me

===============================================================================
Trowel(v0.1.3)
-------------------------------------------------------------------------------
                                                 by Euncheon Lim in WeigelWorld
  Trowel is a high accurate and massively parallelized error correction module for the Illumina sequencing data. This tool only supports FASTQ file.

  1. Recommanded Environment
     RAM: 128 GB memory
     Cores: 64
     Compiler: Latest GCC

  2. Minimum Environment
     Arch: linux 64bit
     RAM: input file size + hash size(depending on the genome you used)
     Core: 1
     Compiler: GCC 4.3
     Library: Boost 1.53.0

  3. Usage
     (1) vi fastq_files
     (2) save the fastq_files with fastq files.
     (3) trowel -f fastq_files -k 19 -t 32

  4. Contents of fastq_files
     (1) Paired-ended read
         uncorrected_1.fastq uncorrected_2.fastq
     (2) Single-ended read
         uncorrected.fastq