File	Date	Author	Commit
autom4te.cache	2013-08-26	Euncheon Lim	[8c49fb] Trowel v. 0.11
m4	2013-08-26	Euncheon Lim	[2a2521] trowel0.11
src	2013-10-25	Euncheon Lim	[052653] Trowel 1.0.3
COPYING	2013-07-26	Euncheon Lim	[2116ba] Add license
Makefile	2013-08-26	Euncheon Lim	[8c49fb] Trowel v. 0.11
Makefile.am	2013-08-26	Euncheon Lim	[8c49fb] Trowel v. 0.11
Makefile.in	2013-08-26	Euncheon Lim	[8c49fb] Trowel v. 0.11
NOTICE	2013-10-25	Euncheon Lim	[052653] Trowel 1.0.3
README	2013-10-25	Euncheon Lim	[052653] Trowel 1.0.3
aclocal.m4	2013-08-26	Euncheon Lim	[8c49fb] Trowel v. 0.11
config.h	2013-08-26	Euncheon Lim	[2a2521] trowel0.11
config.h.in	2013-08-26	Euncheon Lim	[2a2521] trowel0.11
config.log	2013-08-26	Euncheon Lim	[8c49fb] Trowel v. 0.11
config.status	2013-08-26	Euncheon Lim	[8c49fb] Trowel v. 0.11
configure	2013-08-26	Euncheon Lim	[8c49fb] Trowel v. 0.11
configure.ac	2013-08-26	Euncheon Lim	[7913c0] Merge branch 'master' of ssh://git.code.sf.net/...
depcomp	2013-07-26	EunCheon Lim	[ccf6e1] Initial commit
install-sh	2013-07-26	EunCheon Lim	[ccf6e1] Initial commit
missing	2013-07-26	EunCheon Lim	[ccf6e1] Initial commit
stamp-h1	2013-07-26	EunCheon Lim	[ccf6e1] Initial commit

Read Me

===============================================================================
Trowel(v0.1.3)
-------------------------------------------------------------------------------
                                                 by Euncheon Lim in WeigelWorld
  Trowel is a high accurate and massively parallelized error correction module for the Illumina sequencing data. This tool only supports FASTQ file.

  1. Recommanded Environment
     RAM: 128 GB memory
     Cores: 64
     Compiler: Latest GCC

  2. Minimum Environment
     Arch: linux 64bit
     RAM: input file size + hash size(depending on the genome you used)
     Core: 1
     Compiler: GCC 4.3
     Library: Boost 1.53.0

  3. Usage
     (1) vi fastq_files
     (2) save the fastq_files with fastq files.
     (3) trowel -f fastq_files -k 19 -t 32

  4. Contents of fastq_files
     (1) Paired-ended read
         uncorrected_1.fastq uncorrected_2.fastq
     (2) Single-ended read
         uncorrected.fastq