Recent changes to Home

Home modified by Tomasz

Tomasz — Fri, 18 Apr 2014 18:45:27 -0000

--- v16
+++ v17
@@ -9,10 +9,12 @@
 * [duplicates](http://sourceforge.net/p/triagetools/wiki/TriageDuplicates/ "Triage by duplicates") - split reads into unique and duplicate sequences
 * [parts](http://sourceforge.net/p/triagetools/wiki/TriageParts/ "Triage by parts") - split into parts at random
 * [length](http://sourceforge.net/p/triagetools/wiki/TriageLength/ "Triage by length") - partition by read length
+* [lzw](http://sourceforge.net/p/triagetools/wiki/TriageLZW/ "Triage by sequence complexity") - partition by sequence complexity (LZW-based)
 * [quality](http://sourceforge.net/p/triagetools/wiki/TriageQuality/ "Triage by quality") - partition by median base quality score 
 * [readid](http://sourceforge.net/p/triagetools/wiki/TriageReadid/ "Triage by read id") - extract reads using ids
 * [regex](http://sourceforge.net/p/triagetools/wiki/TriageRegex/ "Triage by regular expression") - partition using regular expression pattern matching
 * [sequence](http://sourceforge.net/p/triagetools/wiki/TriageSequence/ "Triage by sequence") - partition according to similarity with a target sequence
+

 Additional resources:

WikiPage Home modified by Tomasz

Tomasz — Sat, 30 Mar 2013 19:10:05 -0000

--- v15
+++ v16
@@ -29,5 +29,8 @@
 

 ###References###

-D. Fimereli, V. Detours, T. Konopka. TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data. 2012.
+D. Fimereli, V. Detours, T. Konopka. [TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data](http://nar.oxfordjournals.org/content/early/2013/02/12/nar.gkt094.abstract). Nucleic Acids Research 2013.

+

+[[download_button]]
+

WikiPage Home modified by Tomasz

Tomasz — Mon, 28 Jan 2013 16:25:26 -0000

--- v14
+++ v15
@@ -23,7 +23,7 @@
 

 ###Download###

-The default [download](https://sourceforge.net/projects/triagetools/) contains object-code, source-code, and all third-party [libraries](http://sourceforge.net/p/triagetools/wiki/TriageLibraries/).
+The default [download](http://sourceforge.net/projects/triagetools/) contains object-code, source-code, and all third-party [libraries](http://sourceforge.net/p/triagetools/wiki/TriageLibraries/).

WikiPage Home modified by Tomasz

Tomasz — Mon, 28 Jan 2013 16:25:05 -0000

--- v13
+++ v14
@@ -23,7 +23,7 @@
 

 ###Download###

-The default [download](http://sourceforge.net/projects/triagetools/files/triagetools/triagetools-0.1.1/triagetools-0.1.1.zip/download) contains object-code, source-code, and all third-party [libraries](http://sourceforge.net/p/triagetools/wiki/TriageLibraries/).
+The default [download](https://sourceforge.net/projects/triagetools/) contains object-code, source-code, and all third-party [libraries](http://sourceforge.net/p/triagetools/wiki/TriageLibraries/).

WikiPage Home modified by Tomasz

Tomasz — Fri, 31 Aug 2012 09:21:31 -0000

--- v12
+++ v13
@@ -2,7 +2,7 @@
 
 TriageTools is a collection of tools for partitioning raw data from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets.  
 
-One of the more interesting tools in the collection is partitioning by [sequence](http://sourceforge.net/p/triagetools/wiki/TriageSequence/ "Triage by sequence") similarity with a target. This tool enables researchers interested in a small region (e.g. a couple of genes) to quickly extract from large fastq files those portions that are relevant to them. Using this tool in combination with fast aligners and variant callers, researchers can obtain genotype information about their regions of interest in about an hour on a standard workstation.   
+One of the more interesting tools in the collection is partitioning by [sequence](http://sourceforge.net/p/triagetools/wiki/TriageSequence/ "Triage by sequence") similarity with a target. This tool enables researchers interested in a small region (e.g. a couple of genes) to quickly extract from large fastq files those portions that are relevant to them. Using this tool in combination with fast aligners and variant callers, researchers working on exome or RNA-seq samples can obtain genotype information about the targeted regions in about an hour on a standard workstation.   
 
 The tools in the collection are:

WikiPage Home modified by Tomasz

Tomasz — Fri, 31 Aug 2012 09:06:01 -0000

--- v11
+++ v12
@@ -2,7 +2,9 @@
 
 TriageTools is a collection of tools for partitioning raw data from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets.  
 
-The tools are:
+One of the more interesting tools in the collection is partitioning by [sequence](http://sourceforge.net/p/triagetools/wiki/TriageSequence/ "Triage by sequence") similarity with a target. This tool enables researchers interested in a small region (e.g. a couple of genes) to quickly extract from large fastq files those portions that are relevant to them. Using this tool in combination with fast aligners and variant callers, researchers can obtain genotype information about their regions of interest in about an hour on a standard workstation.   
+
+The tools in the collection are:
 
 * [duplicates](http://sourceforge.net/p/triagetools/wiki/TriageDuplicates/ "Triage by duplicates") - split reads into unique and duplicate sequences
 * [parts](http://sourceforge.net/p/triagetools/wiki/TriageParts/ "Triage by parts") - split into parts at random
@@ -27,5 +29,5 @@
 

 ###References###
 
-TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data. 2012.
+D. Fimereli, V. Detours, T. Konopka. TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data. 2012.

WikiPage Home modified by Tomasz

Tomasz — Sat, 14 Jul 2012 09:14:15 -0000

--- v10
+++ v11
@@ -15,11 +15,17 @@
 Additional resources:
 
 * [common options ](http://sourceforge.net/p/triagetools/wiki/TriageCommon/ "Common Options for triage tools") - many of the tools share some common options. 
-* [libraries](http://sourceforge.net/p/triagetools/wiki/TriageLibraries/) - list of third-package packages/libraries
 * [version history](http://sourceforge.net/p/triagetools/wiki/TriageVersions/ "version history") - overview of changes and improvements 
 
 
-###References##
+

+###Download###
+
+The default [download](http://sourceforge.net/projects/triagetools/files/triagetools/triagetools-0.1.1/triagetools-0.1.1.zip/download) contains object-code, source-code, and all third-party [libraries](http://sourceforge.net/p/triagetools/wiki/TriageLibraries/).
+
+
+

+###References###
 
 TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data. 2012.

WikiPage Home modified by Tomasz

Tomasz — Thu, 12 Jul 2012 13:36:01 -0000

--- v9
+++ v10
@@ -4,6 +4,7 @@
 
 The tools are:
 
+* [duplicates](http://sourceforge.net/p/triagetools/wiki/TriageDuplicates/ "Triage by duplicates") - split reads into unique and duplicate sequences
 * [parts](http://sourceforge.net/p/triagetools/wiki/TriageParts/ "Triage by parts") - split into parts at random
 * [length](http://sourceforge.net/p/triagetools/wiki/TriageLength/ "Triage by length") - partition by read length
 * [quality](http://sourceforge.net/p/triagetools/wiki/TriageQuality/ "Triage by quality") - partition by median base quality score

WikiPage Home modified by Tomasz

Tomasz — Thu, 12 Jul 2012 12:38:17 -0000

--- v8
+++ v9
@@ -15,6 +15,7 @@
 
 * [common options ](http://sourceforge.net/p/triagetools/wiki/TriageCommon/ "Common Options for triage tools") - many of the tools share some common options. 
 * [libraries](http://sourceforge.net/p/triagetools/wiki/TriageLibraries/) - list of third-package packages/libraries
+* [version history](http://sourceforge.net/p/triagetools/wiki/TriageVersions/ "version history") - overview of changes and improvements 
 
 
 ###References##

WikiPage Home modified by Tomasz

Tomasz — Tue, 10 Jul 2012 15:01:00 -0000

--- v7
+++ v8
@@ -14,7 +14,7 @@
 Additional resources:
 
 * [common options ](http://sourceforge.net/p/triagetools/wiki/TriageCommon/ "Common Options for triage tools") - many of the tools share some common options. 
-
+* [libraries](http://sourceforge.net/p/triagetools/wiki/TriageLibraries/) - list of third-package packages/libraries
 
 
 ###References##