[Treesoft-treefam] TreeFam API fails to returns some nucleotide sequences

[Sebastien M. <seb...@un...>]

Hi,

It seems that TreeFam API fails to return some genes for this family: 
TF105900.

Both from the web site and in command line, the API returns
58 protein sequences for the 'clean' protein alignment,
58 external branches for the 'clean' tree
BUT 56 nucleotides sequences for the 'clean' nucleotide alignment.

BGIOSIFCE019517.1_ORYSA & BGIBMGA012703_BOMMO are not in the 'clean' 
nucleotide alignment.

Do you have an idea why it happens ?
Thanks

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4056
http://bioinfo.unil.ch/