[Treesoft-devel] How to extract 2 or more leaves with the same GID ?

[Sebastien M. <Seb...@un...>]

Hi,

we use your API which is very powerful.
But there is a problem when we try to get the alignment for families 
where one GID (GeneID) is the same for 2 or more leaves:
e.g. 	1 Family 	TF101024
	1 GID 		Smp_150040
	2 leaves	Smp_150040.1 & Smp_150040.2

the nhx method returns the proper tree with distinct Smp_150040.1 & 
Smp_150040.2
But the get_alignment method returns twice Smp_150040.1, with the same 
headers and sequences. Smp_150040.1 is duplicated.


How to resolve this ?

Thanks

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4056