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treebase-guts
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From: <sfr...@us...> - 2012-01-09 01:33:38
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Revision: 1010
http://treebase.svn.sourceforge.net/treebase/?rev=1010&view=rev
Author: sfrgpiel
Date: 2012-01-09 01:33:32 +0000 (Mon, 09 Jan 2012)
Log Message:
-----------
Making the PRF more prominent and updating to the new domain name.
Modified Paths:
--------------
trunk/treebase-web/src/main/webapp/WEB-INF/pages/about.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/people.jsp
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/about.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/about.jsp 2012-01-06 21:20:13 UTC (rev 1009)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/about.jsp 2012-01-09 01:33:32 UTC (rev 1010)
@@ -60,8 +60,8 @@
Computational Phylogenetics").
</p>
<p>
- TreeBASE was released in March 2010 as one of the main products of <a href="http://www.phylorf.org" title="Phyloinformatics Research Foundation, Inc.">The
- Phyloinformatics Research Foundation, Inc.</a>, a Connecticut non-profit
+ TreeBASE was released in March 2010 as one of the main products of <a href="http://www.phylofoundation.org" title="Phyloinformatics Research Foundation, Inc.">The
+ Phyloinformatics Research Foundation, Inc.</a>, a Connecticut non-stock
corporation. The Foundation provides direction, governance, and continuity for
software, data sharing, and communication standards to promote phyloinformatic
research for the scientific community.
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2012-01-06 21:20:13 UTC (rev 1009)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2012-01-09 01:33:32 UTC (rev 1010)
@@ -2,7 +2,14 @@
<div class="gutter">
<h1>Welcome to TreeBASE</h1>
<p>
- TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but are only available to the publication editors or reviewers using a special access code.</p>
+ TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic
+ trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g.,
+ trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in
+ TreeBASE are exposed to the public if they are used in a publication that is in press or published
+ in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in
+ publications that are in preparation or in review can be submitted to TreeBASE but are only available
+ to the authors, publication editors, or reviewers using a special access code. TreeBASE is produced and
+ governed by the <a href="http://www.phylofoundation.org" title="Phyloinformatics Research Foundation, Inc.">The Phyloinformatics Research Foundation, Inc.</a></p>
<p>Some recent additions:</p>
<script language="JavaScript" src="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&date=y&utf=y" charset="UTF-8" type="text/javascript">
</script>
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/people.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/people.jsp 2012-01-06 21:20:13 UTC (rev 1009)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/people.jsp 2012-01-09 01:33:32 UTC (rev 1010)
@@ -175,6 +175,6 @@
<h2>Phyloinformatics Research Foundation Inc, Board</h2>
<ul>
- <li>See <a href="http://www.phylorf.org" title="Phyloinformatics Research Foundation Inc">here</a> for the list of officers and members of the board.</li>
+ <li>See <a href="http://www.phylofoundation.org" title="Phyloinformatics Research Foundation Inc">here</a> for the list of officers and members of the board.</li>
</ul>
</div>
\ No newline at end of file
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From: <sfr...@us...> - 2014-04-13 15:02:09
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Revision: 1107
http://sourceforge.net/p/treebase/code/1107
Author: sfrgpiel
Date: 2014-04-13 15:02:06 +0000 (Sun, 13 Apr 2014)
Log Message:
-----------
Updating links to journals
Modified Paths:
--------------
trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2014-04-13 14:01:53 UTC (rev 1106)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2014-04-13 15:02:06 UTC (rev 1107)
@@ -9,7 +9,8 @@
in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in
publications that are in preparation or in review can be submitted to TreeBASE but are only available
to the authors, publication editors, or reviewers using a special access code. TreeBASE is produced and
- governed by the <a href="http://www.phylofoundation.org" title="Phyloinformatics Research Foundation, Inc.">The Phyloinformatics Research Foundation, Inc.</a></p>
+ governed by the <a href="http://www.phylorf.org" title="Phyloinformatics Research Foundation, Inc.">The Phyloinformatics Research Foundation, Inc.</a></p>
+ <p>As of April 2014, TreeBASE contains data for 4,076 publications written by 8,777 different authors. These studies analyzed 8,233 matrices and resulted in 12,817 trees with 761,460 taxon labels that mapped to 104,593 distinct taxa.</p> </div>
<p>Some recent additions:</p>
<script language="JavaScript" src="http://peabody.research.yale.edu/treebase-feed/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&num=8&date=y" type="text/javascript">
</script>
@@ -27,5 +28,4 @@
<li> A special URL gives journal editors and reviewers anonymous advanced access to data</li>
<li>Programmatic access to the data using the <a href="http://evoinfo.nescent.org/PhyloWS" target="_blank">PhyloWS API</a>. Queries are expressed in URLs using PhyloWS syntax and can return results in RDF as RSS 1.0 feeds, which means that users can set their favorite RSS Reader to fetch all new TreeBASE studies that satisfy a particular query (e.g. return all studies published in "Systematic Biology," or return all trees that include "Homo sapiens," etc)</li>
</ul>
- <p>As of December 2011, TreeBASE contains 2,946 publications written by 6,106 different authors. These studies analyzed 5,717 matrices and resulted in 8,462 trees with 465,762 taxon labels that mapped to 82,043 distinct taxa.</p> </div>
</div>
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp 2014-04-13 14:01:53 UTC (rev 1106)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp 2014-04-13 15:02:06 UTC (rev 1107)
@@ -29,7 +29,7 @@
<!-- aliso -->
<tr>
<td>
- <p><a href="http://www.rsabg.org/research-department/scientific-publications"
+ <p><a href="http://www.rsabg.org/scientific-publications"
title="Aliso">
<img class="journal"
src="images/journal_files/aliso.jpg" alt="Aliso"/>
@@ -101,7 +101,7 @@
<!-- the bryologist -->
<tr>
<td>
- <p><a href="http://192.104.39.110/bryologist.html"
+ <p><a href="http://www.bioone.org/loi/bryo"
title="The Bryologist">
<img class="journal"
src="images/journal_files/bry.jpg" alt="Bryologist"/>
@@ -211,7 +211,7 @@
<td>
<p>
<a
- href="http://www3.interscience.wiley.com/journal/119423602/home">
+ href="http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1752-4571">
<img class="journal"
src="images/journal_files/image002.jpg" alt="Evolutionary Applications"/>
</a>
@@ -526,7 +526,7 @@
<tr>
<td>
<p>
- <a href="http://apsjournals.apsnet.org/loi/phyto?cookieSet=1">
+ <a href="http://apsjournals.apsnet.org/loi/phyto">
<img
class="journal"
src="images/journal_files/image012.jpg"
@@ -544,7 +544,7 @@
<!-- plant disease -->
<tr>
<td>
- <p><a href="http://www.apsnet.org/pd/">
+ <p><a href="http://apsjournals.apsnet.org/loi/pdis">
<img class="journal" src="images/journal_files/image013.jpg" alt="Plant Disease"/>
</a></p>
</td>
@@ -572,7 +572,7 @@
<!-- rhodora -->
<tr>
<td>
- <p><a href="http://www.rhodora.org/Rhodora.html"><img
+ <p><a href="http://www.rhodora.org/rhodora/currentissues.html"><img
class="journal"
src="images/journal_files/image014.gif" alt="Rhodora"/></a></p>
</td>
@@ -629,7 +629,7 @@
<!-- systematic botany -->
<tr>
<td>
- <p><a href="http://www.sysbot.org/">
+ <p><a href="http://www.bioone.org/loi/sbot">
<img class="journal" src="images/journal_files/image018.gif"
alt="Systematic Botany"/></a></p>
</td>
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