From: <sfr...@us...> - 2011-12-16 02:33:48
|
Revision: 1006 http://treebase.svn.sourceforge.net/treebase/?rev=1006&view=rev Author: sfrgpiel Date: 2011-12-16 02:33:42 +0000 (Fri, 16 Dec 2011) Log Message: ----------- Updating the splash screen with an RSS feed Modified Paths: -------------- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp =================================================================== --- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2011-12-13 20:14:19 UTC (rev 1005) +++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2011-12-16 02:33:42 UTC (rev 1006) @@ -2,7 +2,13 @@ <div class="gutter"> <h1>Welcome to TreeBASE</h1> <p> - TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but are only available to the publication editors or reviewers using a special access code. </p> + TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but are only available to the publication editors or reviewers using a special access code.</p> + <p>Some recent additions:</p> + <script language="JavaScript" src="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&date=y&utf=y" charset="UTF-8" type="text/javascript"> + </script> + <noscript> + <a href="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&date=y&utf=y&html=y">View RSS feed</a> + </noscript> <p>The current release includes a host of new features and improvements over the previous TreeBASE prototype. New features include:</p> <ul> <li>Richer annotation of metadata (journal DOIs, specimen georeferences, Genbank accession numbers, etc) </li> @@ -13,8 +19,6 @@ <li>Data are delivered in several serializations, including <a href="http:/hackathon.nescent.org/Supporting_NEXUS_Documentation" target="_blank">NEXUS</a> and <a href="http://www.nexml.org" target="_blank">NeXML</a></li> <li> A special URL gives journal editors and reviewers anonymous advanced access to data</li> <li>Programmatic access to the data using the <a href="http://evoinfo.nescent.org/PhyloWS" target="_blank">PhyloWS API</a>. Queries are expressed in URLs using PhyloWS syntax and can return results in RDF as RSS 1.0 feeds, which means that users can set their favorite RSS Reader to fetch all new TreeBASE studies that satisfy a particular query (e.g. return all studies published in "Systematic Biology," or return all trees that include "Homo sapiens," etc)</li> - </ul> - <p> - As of early 2010, TreeBASE contains 6,500 trees in 2,500 publications written by 4,500 different authors. These trees have 135,000 distinct taxon labels that map to approximately 60,000 distinct taxa. </p> - </div> + </ul> + <p>As of December 2011, TreeBASE contains 2,946 publications written by 6,106 different authors. These studies analyzed 5,717 matrices and resulted in 8,462 trees with 465,762 taxon labels that mapped to 82,043 distinct taxa.</p> </div> </div> This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <sfr...@us...> - 2012-01-10 21:04:40
|
Revision: 1011 http://treebase.svn.sourceforge.net/treebase/?rev=1011&view=rev Author: sfrgpiel Date: 2012-01-10 21:04:34 +0000 (Tue, 10 Jan 2012) Log Message: ----------- Service has changed on http://landmark-project.com/feed2js/, requiring this fix. Modified Paths: -------------- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp =================================================================== --- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2012-01-09 01:33:32 UTC (rev 1010) +++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2012-01-10 21:04:34 UTC (rev 1011) @@ -11,11 +11,11 @@ to the authors, publication editors, or reviewers using a special access code. TreeBASE is produced and governed by the <a href="http://www.phylofoundation.org" title="Phyloinformatics Research Foundation, Inc.">The Phyloinformatics Research Foundation, Inc.</a></p> <p>Some recent additions:</p> - <script language="JavaScript" src="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&date=y&utf=y" charset="UTF-8" type="text/javascript"> - </script> - <noscript> - <a href="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&date=y&utf=y&html=y">View RSS feed</a> - </noscript> + <script language="JavaScript" src="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&num=8&date=y" type="text/javascript"> + </script> + <noscript> + <a href="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&num=8&date=y&html=y">View RSS feed</a> + </noscript> <p>The current release includes a host of new features and improvements over the previous TreeBASE prototype. New features include:</p> <ul> <li>Richer annotation of metadata (journal DOIs, specimen georeferences, Genbank accession numbers, etc) </li> This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <hs...@us...> - 2012-01-11 17:02:53
|
Revision: 1013 http://treebase.svn.sourceforge.net/treebase/?rev=1013&view=rev Author: hshyket Date: 2012-01-11 17:02:42 +0000 (Wed, 11 Jan 2012) Log Message: ----------- Updating location of RSS feed to point to peabody.research.yale.edu Modified Paths: -------------- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp =================================================================== --- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2012-01-11 16:59:50 UTC (rev 1012) +++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2012-01-11 17:02:42 UTC (rev 1013) @@ -11,10 +11,10 @@ to the authors, publication editors, or reviewers using a special access code. TreeBASE is produced and governed by the <a href="http://www.phylofoundation.org" title="Phyloinformatics Research Foundation, Inc.">The Phyloinformatics Research Foundation, Inc.</a></p> <p>Some recent additions:</p> - <script language="JavaScript" src="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&num=8&date=y" type="text/javascript"> + <script language="JavaScript" src="http://peabody.research.yale.edu/treebase-feed/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&num=8&date=y" type="text/javascript"> </script> <noscript> - <a href="http://landmark-project.com/feed2js/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&num=8&date=y&html=y">View RSS feed</a> + <a href="http://pipes.yahoo.com/pipes/pipe.run?_id=41dc2d1544150c1b8e69367059f26950&_render=rss&date=y&utf=y&html=y" target="_blank">View RSS feed</a> </noscript> <p>The current release includes a host of new features and improvements over the previous TreeBASE prototype. New features include:</p> <ul> This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <sfr...@us...> - 2014-04-14 09:41:50
|
Revision: 1109 http://sourceforge.net/p/treebase/code/1109 Author: sfrgpiel Date: 2014-04-14 09:41:47 +0000 (Mon, 14 Apr 2014) Log Message: ----------- Minor text modification Modified Paths: -------------- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp =================================================================== --- trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2014-04-13 18:33:58 UTC (rev 1108) +++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/home.jsp 2014-04-14 09:41:47 UTC (rev 1109) @@ -1,17 +1,20 @@ -<div id="contentRight"> +<div id="contentRight"><div id="contentRight"> <div class="gutter"> - <h1>Welcome to TreeBASE</h1> - <p> - TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic - trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., + <h1>Welcome to TreeBASE</h1> + <p>TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic + trees and the data used to generate them. TreeBASE accepts all kinds of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in - publications that are in preparation or in review can be submitted to TreeBASE but are only available - to the authors, publication editors, or reviewers using a special access code. TreeBASE is produced and - governed by the <a href="http://www.phylorf.org" title="Phyloinformatics Research Foundation, Inc.">The Phyloinformatics Research Foundation, Inc.</a></p> - <p>As of April 2014, TreeBASE contains data for 4,076 publications written by 8,777 different authors. These studies analyzed 8,233 matrices and resulted in 12,817 trees with 761,460 taxon labels that mapped to 104,593 distinct taxa.</p> </div> - <p>Some recent additions:</p> + publications that are in preparation or in review can be submitted to TreeBASE but will not be + available to the public until they have passed peer review. Aside from the submitter, such data + are only available to the publication editors or reviewers using a special access URL. TreeBASE + is produced and governed by the <a href="http://www.phylorf.org" title="Phyloinformatics Research + Foundation, Inc.">The Phyloinformatics Research Foundation, Inc.</a></p> + <p>As of April 2014, TreeBASE contains data for 4,076 publications written by 8,777 different authors. + These studies analyzed 8,233 matrices and resulted in 12,817 trees with 761,460 taxon labels that mapped + to 104,593 distinct taxa.</p> + <p>Some recent additions: <script language="JavaScript" src="http://peabody.research.yale.edu/treebase-feed/feed2js.php?src=http%3A%2F%2Fpipes.yahoo.com%2Fpipes%2Fpipe.run%3F_id%3D41dc2d1544150c1b8e69367059f26950%26_render%3Drss&num=8&date=y" type="text/javascript"> </script> <noscript> @@ -23,9 +26,15 @@ <li>A mapping between taxon labels and taxonomic names in uBio and NCBI for improved normalization of names</li> <li>The ability to visualize and edit trees using Phylowidget</li> <li>The ability to search on tree topology</li> - <li>Persistent and resolvable URIs for data objects in TreeBASE (i.e. studies, trees, matrices) serve as both globally unique identification numbers and resource locators. These can be included in articles and on researcher's websites, making access to TreeBASE data only a click away</li> - <li>Data are delivered in several serializations, including <a href="http:/hackathon.nescent.org/Supporting_NEXUS_Documentation" target="_blank">NEXUS</a> and <a href="http://www.nexml.org" target="_blank">NeXML</a></li> + <li>Persistent and resolvable URIs for data objects in TreeBASE (i.e. studies, trees, matrices) serve as both globally unique identification numbers and + resource locators. These can be included in articles and on researcher's websites, making access to TreeBASE data only a click away</li> + <li>Data are delivered in several serializations, including <a href="http:/hackathon.nescent.org/Supporting_NEXUS_Documentation" target="_blank">NEXUS</a> + and <a href="http://www.nexml.org" target="_blank">NeXML</a></li> <li> A special URL gives journal editors and reviewers anonymous advanced access to data</li> - <li>Programmatic access to the data using the <a href="http://evoinfo.nescent.org/PhyloWS" target="_blank">PhyloWS API</a>. Queries are expressed in URLs using PhyloWS syntax and can return results in RDF as RSS 1.0 feeds, which means that users can set their favorite RSS Reader to fetch all new TreeBASE studies that satisfy a particular query (e.g. return all studies published in "Systematic Biology," or return all trees that include "Homo sapiens," etc)</li> + <li>Programmatic access to the data using the <a href="http://evoinfo.nescent.org/PhyloWS" target="_blank">PhyloWS API</a>. Queries are expressed in + URLs using PhyloWS syntax and can return results in RDF as RSS 1.0 feeds, which means that users can set their favorite + RSS Reader to fetch all new TreeBASE studies that satisfy a particular query (e.g. return all studies published in "Systematic Biology," + or return all trees that include "Homo sapiens," etc)</li> </ul> + </div> </div> This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |