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From: <rv...@us...> - 2010-11-15 15:39:05
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Revision: 759
http://treebase.svn.sourceforge.net/treebase/?rev=759&view=rev
Author: rvos
Date: 2010-11-15 15:38:56 +0000 (Mon, 15 Nov 2010)
Log Message:
-----------
Adding DBIx::Class/Bio::Phylo adaptor classes
Added Paths:
-----------
trunk/treebase-core/src/main/perl/lib/Bio/
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Algorithm.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analysis.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analysisstep.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analyzeddata.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Ancestralstate.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Ancstateset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Chargroup.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/ChargroupColrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charpartition.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CharsetColrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charweight.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CharweightColrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charweightset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Citation.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CitationAuthor.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CitationEditor.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Citationstatus.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CoderecordColrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Codonchar1Colrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Codonchar2Colrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Codonchar3Colrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CodonnoncodingColrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Codonpositionset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Columnrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CompoundElement.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/ContancstateValue.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Cstreenode.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Discretecharstate.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Distancematrixelement.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Gapmode.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Geneticcode.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Geneticcoderecord.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Geneticcodeset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Help.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Itemdefinition.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Itemvalue.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/LeftchangesetCharstate.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Matrix.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/MatrixItemdefinition.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Matrixcolumn.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/MatrixcolumnItemdefinition.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Matrixdatatype.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Matrixelement.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Matrixkind.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Matrixrow.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Nodeattribute.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Person.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Phylochar.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Phylotree.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Phylotreenode.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Polytcount.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/RightchangesetCharstate.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Rowsegment.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Software.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Statechangeset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Stateformat.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Statemodifier.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Stateset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Stepmatrixelement.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Study.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/StudyNexusfile.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Studystatus.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/SubMatrix.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/SubTaxonlabel.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/SubTreeblock.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Submission.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxon.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxonauthority.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxonlabel.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxonlabelgroup.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/TaxonlabelgroupTaxonlabel.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxonlabelpartition.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxonlabelset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/TaxonlabelsetTaxonlabel.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxonlink.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxonset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/TaxonsetTaxon.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Taxonvariant.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treeattribute.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treeblock.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treegroup.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/TreegroupPhylotree.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treekind.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treenodeedge.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treepartition.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treequality.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treeset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/TreesetPhylotree.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Treetype.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Typeset.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/User.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Userrole.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Usertype.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Usertyperecord.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/UsertyperrdColrange.pm
trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE.pm
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Algorithm.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Algorithm.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Algorithm.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,188 @@
+package Bio::Phylo::TreeBASE::Result::Algorithm;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Algorithm
+
+=cut
+
+__PACKAGE__->table("algorithm");
+
+=head1 ACCESSORS
+
+=head2 type
+
+ data_type: 'char'
+ is_nullable: 0
+ size: 1
+
+=head2 algorithm_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'algorithm_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 description
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 2000
+
+=head2 propertyname
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 propertyvalue
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 usertype_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=head2 gapmode_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=head2 polytcount_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "type",
+ { data_type => "char", is_nullable => 0, size => 1 },
+ "algorithm_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "algorithm_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "description",
+ { data_type => "varchar", is_nullable => 1, size => 2000 },
+ "propertyname",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "propertyvalue",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "usertype_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+ "gapmode_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+ "polytcount_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("algorithm_id");
+
+=head1 RELATIONS
+
+=head2 gapmode
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Gapmode>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "gapmode",
+ "Bio::Phylo::TreeBASE::Result::Gapmode",
+ { gapmode_id => "gapmode_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 polytcount
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Polytcount>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "polytcount",
+ "Bio::Phylo::TreeBASE::Result::Polytcount",
+ { polytcount_id => "polytcount_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 usertype
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Usertype>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "usertype",
+ "Bio::Phylo::TreeBASE::Result::Usertype",
+ { usertype_id => "usertype_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 analysissteps
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Analysisstep>
+
+=cut
+
+__PACKAGE__->has_many(
+ "analysissteps",
+ "Bio::Phylo::TreeBASE::Result::Analysisstep",
+ { "foreign.algorithm_id" => "self.algorithm_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:wxKvAVkFQHMlQu7n/NcF/A
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analysis.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analysis.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analysis.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,130 @@
+package Bio::Phylo::TreeBASE::Result::Analysis;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Analysis
+
+=cut
+
+__PACKAGE__->table("analysis");
+
+=head1 ACCESSORS
+
+=head2 analysis_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'analysis_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 name
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 notes
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 2000
+
+=head2 validated
+
+ data_type: 'boolean'
+ is_nullable: 1
+
+=head2 study_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=head2 analysis_order
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "analysis_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "analysis_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "name",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "notes",
+ { data_type => "varchar", is_nullable => 1, size => 2000 },
+ "validated",
+ { data_type => "boolean", is_nullable => 1 },
+ "study_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+ "analysis_order",
+ { data_type => "integer", is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("analysis_id");
+
+=head1 RELATIONS
+
+=head2 study
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Study>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "study",
+ "Bio::Phylo::TreeBASE::Result::Study",
+ { study_id => "study_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 analysissteps
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Analysisstep>
+
+=cut
+
+__PACKAGE__->has_many(
+ "analysissteps",
+ "Bio::Phylo::TreeBASE::Result::Analysisstep",
+ { "foreign.analysis_id" => "self.analysis_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:tZ7CJ1RYuZPag7ntKKRKuA
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analysisstep.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analysisstep.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analysisstep.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,187 @@
+package Bio::Phylo::TreeBASE::Result::Analysisstep;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Analysisstep
+
+=cut
+
+__PACKAGE__->table("analysisstep");
+
+=head1 ACCESSORS
+
+=head2 analysisstep_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'analysisstep_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 commands
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 2000
+
+=head2 name
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 notes
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 2000
+
+=head2 algorithm_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=head2 analysis_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=head2 software_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=head2 step_order
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "analysisstep_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "analysisstep_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "commands",
+ { data_type => "varchar", is_nullable => 1, size => 2000 },
+ "name",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "notes",
+ { data_type => "varchar", is_nullable => 1, size => 2000 },
+ "algorithm_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+ "analysis_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+ "software_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+ "step_order",
+ { data_type => "integer", is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("analysisstep_id");
+
+=head1 RELATIONS
+
+=head2 algorithm
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Algorithm>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "algorithm",
+ "Bio::Phylo::TreeBASE::Result::Algorithm",
+ { algorithm_id => "algorithm_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 analysis
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Analysis>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "analysis",
+ "Bio::Phylo::TreeBASE::Result::Analysis",
+ { analysis_id => "analysis_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 software
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Software>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "software",
+ "Bio::Phylo::TreeBASE::Result::Software",
+ { software_id => "software_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 analyzeddatas
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Analyzeddata>
+
+=cut
+
+__PACKAGE__->has_many(
+ "analyzeddatas",
+ "Bio::Phylo::TreeBASE::Result::Analyzeddata",
+ { "foreign.analysisstep_id" => "self.analysisstep_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:5AheD5cN0TdR+3kkdXGNzA
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analyzeddata.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analyzeddata.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Analyzeddata.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,166 @@
+package Bio::Phylo::TreeBASE::Result::Analyzeddata;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Analyzeddata
+
+=cut
+
+__PACKAGE__->table("analyzeddata");
+
+=head1 ACCESSORS
+
+=head2 type
+
+ data_type: 'char'
+ is_nullable: 0
+ size: 1
+
+=head2 analyzeddata_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'analyzeddata_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 input
+
+ data_type: 'boolean'
+ is_nullable: 1
+
+=head2 notes
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 2000
+
+=head2 treelength
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 analysisstep_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=head2 matrix_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=head2 phylotree_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "type",
+ { data_type => "char", is_nullable => 0, size => 1 },
+ "analyzeddata_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "analyzeddata_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "input",
+ { data_type => "boolean", is_nullable => 1 },
+ "notes",
+ { data_type => "varchar", is_nullable => 1, size => 2000 },
+ "treelength",
+ { data_type => "integer", is_nullable => 1 },
+ "analysisstep_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+ "matrix_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+ "phylotree_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("analyzeddata_id");
+
+=head1 RELATIONS
+
+=head2 matrix
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Matrix>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "matrix",
+ "Bio::Phylo::TreeBASE::Result::Matrix",
+ { matrix_id => "matrix_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 phylotree
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Phylotree>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "phylotree",
+ "Bio::Phylo::TreeBASE::Result::Phylotree",
+ { phylotree_id => "phylotree_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 analysisstep
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Analysisstep>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "analysisstep",
+ "Bio::Phylo::TreeBASE::Result::Analysisstep",
+ { analysisstep_id => "analysisstep_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:2JF1Q0rUjUer1dnLfetDRQ
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Ancestralstate.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Ancestralstate.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Ancestralstate.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,167 @@
+package Bio::Phylo::TreeBASE::Result::Ancestralstate;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Ancestralstate
+
+=cut
+
+__PACKAGE__->table("ancestralstate");
+
+=head1 ACCESSORS
+
+=head2 type
+
+ data_type: 'char'
+ is_nullable: 0
+ size: 1
+
+=head2 ancestralstate_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'ancestralstate_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 title
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 ancvalue
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 discretecharstate_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=head2 ancstateset_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "type",
+ { data_type => "char", is_nullable => 0, size => 1 },
+ "ancestralstate_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "ancestralstate_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "title",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "ancvalue",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "discretecharstate_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+ "ancstateset_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("ancestralstate_id");
+
+=head1 RELATIONS
+
+=head2 discretecharstate
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Discretecharstate>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "discretecharstate",
+ "Bio::Phylo::TreeBASE::Result::Discretecharstate",
+ { discretecharstate_id => "discretecharstate_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 ancstateset
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Ancstateset>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "ancstateset",
+ "Bio::Phylo::TreeBASE::Result::Ancstateset",
+ { ancstateset_id => "ancstateset_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 contancstate_values
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::ContancstateValue>
+
+=cut
+
+__PACKAGE__->has_many(
+ "contancstate_values",
+ "Bio::Phylo::TreeBASE::Result::ContancstateValue",
+ { "foreign.ancstate_id" => "self.ancestralstate_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+=head2 discretecharstates
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Discretecharstate>
+
+=cut
+
+__PACKAGE__->has_many(
+ "discretecharstates",
+ "Bio::Phylo::TreeBASE::Result::Discretecharstate",
+ { "foreign.ancestralstate_id" => "self.ancestralstate_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:0O8yGH1q0Ln7F26g24sJnA
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Ancstateset.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Ancstateset.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Ancstateset.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,123 @@
+package Bio::Phylo::TreeBASE::Result::Ancstateset;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Ancstateset
+
+=cut
+
+__PACKAGE__->table("ancstateset");
+
+=head1 ACCESSORS
+
+=head2 ancstateset_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'ancstateset_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 title
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 matrix_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "ancstateset_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "ancstateset_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "title",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "matrix_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("ancstateset_id");
+
+=head1 RELATIONS
+
+=head2 ancestralstates
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Ancestralstate>
+
+=cut
+
+__PACKAGE__->has_many(
+ "ancestralstates",
+ "Bio::Phylo::TreeBASE::Result::Ancestralstate",
+ { "foreign.ancstateset_id" => "self.ancstateset_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+=head2 matrix
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Matrix>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "matrix",
+ "Bio::Phylo::TreeBASE::Result::Matrix",
+ { matrix_id => "matrix_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 matrixes
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Matrix>
+
+=cut
+
+__PACKAGE__->has_many(
+ "matrixes",
+ "Bio::Phylo::TreeBASE::Result::Matrix",
+ { "foreign.ancstateset_id" => "self.ancstateset_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:rsUxLRGfJtShCHIB8eBgeg
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Chargroup.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Chargroup.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Chargroup.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,108 @@
+package Bio::Phylo::TreeBASE::Result::Chargroup;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Chargroup
+
+=cut
+
+__PACKAGE__->table("chargroup");
+
+=head1 ACCESSORS
+
+=head2 chargroup_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'chargroup_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 title
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 charpartition_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "chargroup_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "chargroup_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "title",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "charpartition_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("chargroup_id");
+
+=head1 RELATIONS
+
+=head2 charpartition
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Charpartition>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "charpartition",
+ "Bio::Phylo::TreeBASE::Result::Charpartition",
+ { charpartition_id => "charpartition_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 chargroup_colranges
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::ChargroupColrange>
+
+=cut
+
+__PACKAGE__->has_many(
+ "chargroup_colranges",
+ "Bio::Phylo::TreeBASE::Result::ChargroupColrange",
+ { "foreign.chargroup_id" => "self.chargroup_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:K4U0nWHRs+OHlRRhkls9Hg
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/ChargroupColrange.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/ChargroupColrange.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/ChargroupColrange.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,82 @@
+package Bio::Phylo::TreeBASE::Result::ChargroupColrange;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::ChargroupColrange
+
+=cut
+
+__PACKAGE__->table("chargroup_colrange");
+
+=head1 ACCESSORS
+
+=head2 chargroup_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=head2 columnrange_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=cut
+
+__PACKAGE__->add_columns(
+ "chargroup_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+ "columnrange_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+);
+__PACKAGE__->add_unique_constraint("chargroup_colrange_columnrange_id_key", ["columnrange_id"]);
+
+=head1 RELATIONS
+
+=head2 columnrange
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Columnrange>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "columnrange",
+ "Bio::Phylo::TreeBASE::Result::Columnrange",
+ { columnrange_id => "columnrange_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+=head2 chargroup
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Chargroup>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "chargroup",
+ "Bio::Phylo::TreeBASE::Result::Chargroup",
+ { chargroup_id => "chargroup_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:WiSPNuUGqOjPptjMQdNfiQ
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charpartition.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charpartition.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charpartition.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,108 @@
+package Bio::Phylo::TreeBASE::Result::Charpartition;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Charpartition
+
+=cut
+
+__PACKAGE__->table("charpartition");
+
+=head1 ACCESSORS
+
+=head2 charpartition_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'charpartition_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 title
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 matrix_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "charpartition_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "charpartition_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "title",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "matrix_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("charpartition_id");
+
+=head1 RELATIONS
+
+=head2 chargroups
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Chargroup>
+
+=cut
+
+__PACKAGE__->has_many(
+ "chargroups",
+ "Bio::Phylo::TreeBASE::Result::Chargroup",
+ { "foreign.charpartition_id" => "self.charpartition_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+=head2 matrix
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Matrix>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "matrix",
+ "Bio::Phylo::TreeBASE::Result::Matrix",
+ { matrix_id => "matrix_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:jbtbS33AWrZksTMRUJ11QQ
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charset.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charset.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charset.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,131 @@
+package Bio::Phylo::TreeBASE::Result::Charset;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Charset
+
+=cut
+
+__PACKAGE__->table("charset");
+
+=head1 ACCESSORS
+
+=head2 type
+
+ data_type: 'char'
+ is_nullable: 0
+ size: 1
+
+=head2 charset_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'charset_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 title
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 matrix_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "type",
+ { data_type => "char", is_nullable => 0, size => 1 },
+ "charset_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "charset_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "title",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "matrix_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("charset_id");
+
+=head1 RELATIONS
+
+=head2 matrix
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Matrix>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "matrix",
+ "Bio::Phylo::TreeBASE::Result::Matrix",
+ { matrix_id => "matrix_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 charset_colranges
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::CharsetColrange>
+
+=cut
+
+__PACKAGE__->has_many(
+ "charset_colranges",
+ "Bio::Phylo::TreeBASE::Result::CharsetColrange",
+ { "foreign.charset_id" => "self.charset_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+=head2 matrixes
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Matrix>
+
+=cut
+
+__PACKAGE__->has_many(
+ "matrixes",
+ "Bio::Phylo::TreeBASE::Result::Matrix",
+ { "foreign.charset_id" => "self.charset_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:U+TzYIJrXwUMX1B+DljwAQ
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CharsetColrange.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CharsetColrange.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CharsetColrange.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,82 @@
+package Bio::Phylo::TreeBASE::Result::CharsetColrange;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::CharsetColrange
+
+=cut
+
+__PACKAGE__->table("charset_colrange");
+
+=head1 ACCESSORS
+
+=head2 charset_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=head2 columnrange_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=cut
+
+__PACKAGE__->add_columns(
+ "charset_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+ "columnrange_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+);
+__PACKAGE__->add_unique_constraint("charset_colrange_columnrange_id_key", ["columnrange_id"]);
+
+=head1 RELATIONS
+
+=head2 columnrange
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Columnrange>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "columnrange",
+ "Bio::Phylo::TreeBASE::Result::Columnrange",
+ { columnrange_id => "columnrange_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+=head2 charset
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Charset>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "charset",
+ "Bio::Phylo::TreeBASE::Result::Charset",
+ { charset_id => "charset_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:WqXcFABK83Yw6t8mWN5rig
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charweight.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charweight.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charweight.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,122 @@
+package Bio::Phylo::TreeBASE::Result::Charweight;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Charweight
+
+=cut
+
+__PACKAGE__->table("charweight");
+
+=head1 ACCESSORS
+
+=head2 type
+
+ data_type: 'char'
+ is_nullable: 0
+ size: 1
+
+=head2 charweight_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'charweight_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 weight
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 realweight
+
+ data_type: 'double precision'
+ is_nullable: 1
+
+=head2 charweightset_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "type",
+ { data_type => "char", is_nullable => 0, size => 1 },
+ "charweight_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "charweight_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "weight",
+ { data_type => "integer", is_nullable => 1 },
+ "realweight",
+ { data_type => "double precision", is_nullable => 1 },
+ "charweightset_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("charweight_id");
+
+=head1 RELATIONS
+
+=head2 charweightset
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Charweightset>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "charweightset",
+ "Bio::Phylo::TreeBASE::Result::Charweightset",
+ { charweightset_id => "charweightset_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 charweight_colranges
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::CharweightColrange>
+
+=cut
+
+__PACKAGE__->has_many(
+ "charweight_colranges",
+ "Bio::Phylo::TreeBASE::Result::CharweightColrange",
+ { "foreign.charweight_id" => "self.charweight_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:zz3CjIbj/VAUeAqM9EKSQA
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CharweightColrange.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CharweightColrange.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CharweightColrange.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,82 @@
+package Bio::Phylo::TreeBASE::Result::CharweightColrange;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::CharweightColrange
+
+=cut
+
+__PACKAGE__->table("charweight_colrange");
+
+=head1 ACCESSORS
+
+=head2 charweight_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=head2 columnrange_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=cut
+
+__PACKAGE__->add_columns(
+ "charweight_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+ "columnrange_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+);
+__PACKAGE__->add_unique_constraint("charweight_colrange_columnrange_id_key", ["columnrange_id"]);
+
+=head1 RELATIONS
+
+=head2 columnrange
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Columnrange>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "columnrange",
+ "Bio::Phylo::TreeBASE::Result::Columnrange",
+ { columnrange_id => "columnrange_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+=head2 charweight
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Charweight>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "charweight",
+ "Bio::Phylo::TreeBASE::Result::Charweight",
+ { charweight_id => "charweight_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:r6rX8xb3XGDWbPe4JjCiYw
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charweightset.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charweightset.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Charweightset.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,123 @@
+package Bio::Phylo::TreeBASE::Result::Charweightset;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Charweightset
+
+=cut
+
+__PACKAGE__->table("charweightset");
+
+=head1 ACCESSORS
+
+=head2 charweightset_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'charweightset_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 title
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 matrix_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "charweightset_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "charweightset_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "title",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "matrix_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("charweightset_id");
+
+=head1 RELATIONS
+
+=head2 charweights
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Charweight>
+
+=cut
+
+__PACKAGE__->has_many(
+ "charweights",
+ "Bio::Phylo::TreeBASE::Result::Charweight",
+ { "foreign.charweightset_id" => "self.charweightset_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+=head2 matrix
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Matrix>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "matrix",
+ "Bio::Phylo::TreeBASE::Result::Matrix",
+ { matrix_id => "matrix_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 matrixes
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Matrix>
+
+=cut
+
+__PACKAGE__->has_many(
+ "matrixes",
+ "Bio::Phylo::TreeBASE::Result::Matrix",
+ { "foreign.charweightset_id" => "self.charweightset_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:c7KqMIx7Y0mt/82fXyZv2Q
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Citation.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Citation.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Citation.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,264 @@
+package Bio::Phylo::TreeBASE::Result::Citation;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::Citation
+
+=cut
+
+__PACKAGE__->table("citation");
+
+=head1 ACCESSORS
+
+=head2 type
+
+ data_type: 'char'
+ is_nullable: 0
+ size: 1
+
+=head2 citation_id
+
+ data_type: 'bigint'
+ is_auto_increment: 1
+ is_nullable: 0
+ sequence: 'citation_id_sequence'
+
+=head2 version
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 pmid
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 url
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 abstract
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 10000
+
+=head2 doi
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 keywords
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 pages
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 publishyear
+
+ data_type: 'integer'
+ is_nullable: 1
+
+=head2 published
+
+ data_type: 'boolean'
+ is_nullable: 1
+
+=head2 title
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 500
+
+=head2 issue
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 journal
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 volume
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 isbn
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 booktitle
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 city
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 publisher
+
+ data_type: 'varchar'
+ is_nullable: 1
+ size: 255
+
+=head2 citationstatus_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 1
+
+=cut
+
+__PACKAGE__->add_columns(
+ "type",
+ { data_type => "char", is_nullable => 0, size => 1 },
+ "citation_id",
+ {
+ data_type => "bigint",
+ is_auto_increment => 1,
+ is_nullable => 0,
+ sequence => "citation_id_sequence",
+ },
+ "version",
+ { data_type => "integer", is_nullable => 1 },
+ "pmid",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "url",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "abstract",
+ { data_type => "varchar", is_nullable => 1, size => 10000 },
+ "doi",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "keywords",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "pages",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "publishyear",
+ { data_type => "integer", is_nullable => 1 },
+ "published",
+ { data_type => "boolean", is_nullable => 1 },
+ "title",
+ { data_type => "varchar", is_nullable => 1, size => 500 },
+ "issue",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "journal",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "volume",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "isbn",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "booktitle",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "city",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "publisher",
+ { data_type => "varchar", is_nullable => 1, size => 255 },
+ "citationstatus_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 1 },
+);
+__PACKAGE__->set_primary_key("citation_id");
+
+=head1 RELATIONS
+
+=head2 citationstatus
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Citationstatus>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "citationstatus",
+ "Bio::Phylo::TreeBASE::Result::Citationstatus",
+ { citationstatus_id => "citationstatus_id" },
+ {
+ is_deferrable => 1,
+ join_type => "LEFT",
+ on_delete => "CASCADE",
+ on_update => "CASCADE",
+ },
+);
+
+=head2 citation_authors
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::CitationAuthor>
+
+=cut
+
+__PACKAGE__->has_many(
+ "citation_authors",
+ "Bio::Phylo::TreeBASE::Result::CitationAuthor",
+ { "foreign.citation_id" => "self.citation_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+=head2 citation_editors
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::CitationEditor>
+
+=cut
+
+__PACKAGE__->has_many(
+ "citation_editors",
+ "Bio::Phylo::TreeBASE::Result::CitationEditor",
+ { "foreign.citation_id" => "self.citation_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+=head2 studies
+
+Type: has_many
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Study>
+
+=cut
+
+__PACKAGE__->has_many(
+ "studies",
+ "Bio::Phylo::TreeBASE::Result::Study",
+ { "foreign.citation_id" => "self.citation_id" },
+ { cascade_copy => 0, cascade_delete => 0 },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:qDcoG/xxDv4e0sgMznZgWw
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CitationAuthor.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CitationAuthor.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CitationAuthor.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,89 @@
+package Bio::Phylo::TreeBASE::Result::CitationAuthor;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::CitationAuthor
+
+=cut
+
+__PACKAGE__->table("citation_author");
+
+=head1 ACCESSORS
+
+=head2 citation_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=head2 authors_person_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=head2 author_order
+
+ data_type: 'integer'
+ is_nullable: 0
+
+=cut
+
+__PACKAGE__->add_columns(
+ "citation_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+ "authors_person_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+ "author_order",
+ { data_type => "integer", is_nullable => 0 },
+);
+__PACKAGE__->set_primary_key("citation_id", "author_order");
+
+=head1 RELATIONS
+
+=head2 citation
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Citation>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "citation",
+ "Bio::Phylo::TreeBASE::Result::Citation",
+ { citation_id => "citation_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+=head2 authors_person
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Person>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "authors_person",
+ "Bio::Phylo::TreeBASE::Result::Person",
+ { person_id => "authors_person_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:HFPvlcMUJ/i+CXW41Pqwrg
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CitationEditor.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CitationEditor.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/CitationEditor.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1,89 @@
+package Bio::Phylo::TreeBASE::Result::CitationEditor;
+
+# Created by DBIx::Class::Schema::Loader
+# DO NOT MODIFY THE FIRST PART OF THIS FILE
+
+use strict;
+use warnings;
+
+use base 'DBIx::Class::Core';
+
+
+=head1 NAME
+
+Bio::Phylo::TreeBASE::Result::CitationEditor
+
+=cut
+
+__PACKAGE__->table("citation_editor");
+
+=head1 ACCESSORS
+
+=head2 citation_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=head2 editors_person_id
+
+ data_type: 'bigint'
+ is_foreign_key: 1
+ is_nullable: 0
+
+=head2 editor_order
+
+ data_type: 'integer'
+ is_nullable: 0
+
+=cut
+
+__PACKAGE__->add_columns(
+ "citation_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+ "editors_person_id",
+ { data_type => "bigint", is_foreign_key => 1, is_nullable => 0 },
+ "editor_order",
+ { data_type => "integer", is_nullable => 0 },
+);
+__PACKAGE__->set_primary_key("citation_id", "editor_order");
+
+=head1 RELATIONS
+
+=head2 citation
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Citation>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "citation",
+ "Bio::Phylo::TreeBASE::Result::Citation",
+ { citation_id => "citation_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+=head2 editors_person
+
+Type: belongs_to
+
+Related object: L<Bio::Phylo::TreeBASE::Result::Person>
+
+=cut
+
+__PACKAGE__->belongs_to(
+ "editors_person",
+ "Bio::Phylo::TreeBASE::Result::Person",
+ { person_id => "editors_person_id" },
+ { is_deferrable => 1, on_delete => "CASCADE", on_update => "CASCADE" },
+);
+
+
+# Created by DBIx::Class::Schema::Loader v0.07002 @ 2010-11-13 19:19:22
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:7Ok5pELGYykNKOX9IgEvJQ
+
+
+# You can replace this text with custom content, and it will be preserved on regeneration
+1;
Added: trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Citationstatus.pm
===================================================================
--- trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Citationstatus.pm (rev 0)
+++ trunk/treebase-core/src/main/perl/lib/Bio/Phylo/TreeBASE/Result/Citationstatus.pm 2010-11-15 15:38:56 UTC (rev 759)
@@ -0,0 +1...
[truncated message content] |
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