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From: <rv...@us...> - 2010-03-15 01:32:57
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Revision: 589
http://treebase.svn.sourceforge.net/treebase/?rev=589&view=rev
Author: rvos
Date: 2010-03-15 01:32:50 +0000 (Mon, 15 Mar 2010)
Log Message:
-----------
Now stores the URIs for Annotation predicates
Modified Paths:
--------------
trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2010-03-15 01:31:23 UTC (rev 588)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2010-03-15 01:32:50 UTC (rev 589)
@@ -1,7 +1,16 @@
package org.cipres.treebase;
+import java.net.URI;
+
public class Constants {
public static final int MIN_INTERESTING_PHYLOCHAR_ID = 7;
+ public static final URI DwCURI = URI.create("http://rs.tdwg.org/dwc/terms/");
+ public static final URI TBTermsURI = URI.create("http://treebase.org/terms#");
+ public static final URI DCTermsURI = URI.create("http://purl.org/dc/terms/");
+ public static final URI DCURI = URI.create("http://purl.org/dc/elements/1.1/");
+ public static final URI PrismURI = URI.create("http://prismstandard.org/namespaces/1.2/basic/");
+ public static final URI BaseURI = URI.create("http://purl.org/PHYLO/TREEBASE/PHYLOWS/");
+ public static final URI OWLURI = URI.create("http://www.w3.org/2002/07/owl#");
}
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From: <rv...@us...> - 2010-03-16 16:48:29
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Revision: 599
http://treebase.svn.sourceforge.net/treebase/?rev=599&view=rev
Author: rvos
Date: 2010-03-16 16:48:22 +0000 (Tue, 16 Mar 2010)
Log Message:
-----------
Added constants for SKOS, NCBI and uBio.
Modified Paths:
--------------
trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2010-03-16 16:47:24 UTC (rev 598)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2010-03-16 16:48:22 UTC (rev 599)
@@ -12,5 +12,9 @@
public static final URI PrismURI = URI.create("http://prismstandard.org/namespaces/1.2/basic/");
public static final URI BaseURI = URI.create("http://purl.org/PHYLO/TREEBASE/PHYLOWS/");
public static final URI OWLURI = URI.create("http://www.w3.org/2002/07/owl#");
+ public static final URI SKOSURI = URI.create("http://www.w3.org/2004/02/skos/core#");
+ public static final String NCBITaxonomyBase = "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=";
+ public static final String uBioBase = "http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:";
+ public static final String NCBITaxonomyFormat = "http://purl.uniprot.org/taxonomy/%s.rdf";
}
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From: <rv...@us...> - 2010-06-03 17:13:23
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Revision: 709
http://treebase.svn.sourceforge.net/treebase/?rev=709&view=rev
Author: rvos
Date: 2010-06-03 17:13:16 +0000 (Thu, 03 Jun 2010)
Log Message:
-----------
Adding RDF and RDF-schema namespaces for CDAO generation. Changed the template for NCBI (UniProt) URIs to remove the rdf suffix, as per @rdmpage's recommendation.
Modified Paths:
--------------
trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2010-06-02 14:42:42 UTC (rev 708)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2010-06-03 17:13:16 UTC (rev 709)
@@ -13,8 +13,10 @@
public static final URI BaseURI = URI.create("http://purl.org/PHYLO/TREEBASE/PHYLOWS/");
public static final URI OWLURI = URI.create("http://www.w3.org/2002/07/owl#");
public static final URI SKOSURI = URI.create("http://www.w3.org/2004/02/skos/core#");
+ public static final URI RDFSURI = URI.create("http://www.w3.org/2000/01/rdf-schema#");
+ public static final URI RDFURI = URI.create("http://www.w3.org/1999/02/22-rdf-syntax-ns#");
public static final String NCBITaxonomyBase = "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=";
public static final String uBioBase = "http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:";
- public static final String NCBITaxonomyFormat = "http://purl.uniprot.org/taxonomy/%s.rdf";
+ public static final String NCBITaxonomyFormat = "http://purl.uniprot.org/taxonomy/%s";
}
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From: <rv...@us...> - 2012-02-01 23:33:05
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Revision: 1041
http://treebase.svn.sourceforge.net/treebase/?rev=1041&view=rev
Author: rvos
Date: 2012-02-01 23:32:59 +0000 (Wed, 01 Feb 2012)
Log Message:
-----------
Set phylows purl to all lower case.
Modified Paths:
--------------
trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2012-02-01 23:15:59 UTC (rev 1040)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2012-02-01 23:32:59 UTC (rev 1041)
@@ -10,7 +10,7 @@
public static final URI DCTermsURI = URI.create("http://purl.org/dc/terms/");
public static final URI DCURI = URI.create("http://purl.org/dc/elements/1.1/");
public static final URI PrismURI = URI.create("http://prismstandard.org/namespaces/1.2/basic/");
- public static final URI BaseURI = URI.create("http://purl.org/PHYLO/TREEBASE/PHYLOWS/");
+ public static final URI BaseURI = URI.create("http://purl.org/phylo/treebase/phylows/");
public static final URI OWLURI = URI.create("http://www.w3.org/2002/07/owl#");
public static final URI SKOSURI = URI.create("http://www.w3.org/2004/02/skos/core#");
public static final URI RDFSURI = URI.create("http://www.w3.org/2000/01/rdf-schema#");
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From: <rv...@us...> - 2012-02-03 22:45:59
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Revision: 1047
http://treebase.svn.sourceforge.net/treebase/?rev=1047&view=rev
Author: rvos
Date: 2012-02-03 22:45:53 +0000 (Fri, 03 Feb 2012)
Log Message:
-----------
We're now setting the purl base from what's supplied by TreebaseUtil.getPurlBase, no longer using the ugly NCBI URLs but the UniProt ones.
Modified Paths:
--------------
trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2012-02-03 22:41:19 UTC (rev 1046)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2012-02-03 22:45:53 UTC (rev 1047)
@@ -10,12 +10,11 @@
public static final URI DCTermsURI = URI.create("http://purl.org/dc/terms/");
public static final URI DCURI = URI.create("http://purl.org/dc/elements/1.1/");
public static final URI PrismURI = URI.create("http://prismstandard.org/namespaces/1.2/basic/");
- public static final URI BaseURI = URI.create("http://purl.org/phylo/treebase/phylows/");
+ public static final URI BaseURI = URI.create(TreebaseUtil.getPurlBase());
public static final URI OWLURI = URI.create("http://www.w3.org/2002/07/owl#");
public static final URI SKOSURI = URI.create("http://www.w3.org/2004/02/skos/core#");
public static final URI RDFSURI = URI.create("http://www.w3.org/2000/01/rdf-schema#");
public static final URI RDFURI = URI.create("http://www.w3.org/1999/02/22-rdf-syntax-ns#");
- public static final String NCBITaxonomyBase = "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=";
public static final String uBioBase = "http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:";
public static final String NCBITaxonomyFormat = "http://purl.uniprot.org/taxonomy/%s";
}
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From: <rv...@us...> - 2012-02-04 00:23:39
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Revision: 1053
http://treebase.svn.sourceforge.net/treebase/?rev=1053&view=rev
Author: rvos
Date: 2012-02-04 00:23:33 +0000 (Sat, 04 Feb 2012)
Log Message:
-----------
now uses same purl as in owl file for treebase terms
Modified Paths:
--------------
trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2012-02-04 00:10:14 UTC (rev 1052)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2012-02-04 00:23:33 UTC (rev 1053)
@@ -6,7 +6,7 @@
public class Constants {
public static final int MIN_INTERESTING_PHYLOCHAR_ID = 7;
public static final URI DwCURI = URI.create("http://rs.tdwg.org/dwc/terms/");
- public static final URI TBTermsURI = URI.create("http://treebase.org/terms#");
+ public static final URI TBTermsURI = URI.create("http://purl.org/phylo/treebase/2.0/terms#");
public static final URI DCTermsURI = URI.create("http://purl.org/dc/terms/");
public static final URI DCURI = URI.create("http://purl.org/dc/elements/1.1/");
public static final URI PrismURI = URI.create("http://prismstandard.org/namespaces/1.2/basic/");
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From: <rv...@us...> - 2012-02-03 23:10:45
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Revision: 1050
http://treebase.svn.sourceforge.net/treebase/?rev=1050&view=rev
Author: rvos
Date: 2012-02-03 23:10:39 +0000 (Fri, 03 Feb 2012)
Log Message:
-----------
Apparently, JNDI is not properly configured on dev. Reverting to hardcoded purl.
Modified Paths:
--------------
trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2012-02-03 22:51:21 UTC (rev 1049)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/Constants.java 2012-02-03 23:10:39 UTC (rev 1050)
@@ -10,7 +10,7 @@
public static final URI DCTermsURI = URI.create("http://purl.org/dc/terms/");
public static final URI DCURI = URI.create("http://purl.org/dc/elements/1.1/");
public static final URI PrismURI = URI.create("http://prismstandard.org/namespaces/1.2/basic/");
- public static final URI BaseURI = URI.create(TreebaseUtil.getPurlBase());
+ public static final URI BaseURI = URI.create("http://purl.org/phylo/treebase/phylows/");
public static final URI OWLURI = URI.create("http://www.w3.org/2002/07/owl#");
public static final URI SKOSURI = URI.create("http://www.w3.org/2004/02/skos/core#");
public static final URI RDFSURI = URI.create("http://www.w3.org/2000/01/rdf-schema#");
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