Thread: [Treebase-guts] SF.net SVN: treebase:[133] trunk/treebase-web/src/main

SourceForge Headquarters 225 Broadway Suite 1600 San Diego, CA 92101 +1 (858) 422-6466

Revision: 133
          http://treebase.svn.sourceforge.net/treebase/?rev=133&view=rev
Author:   rvos
Date:     2009-06-27 07:04:54 +0000 (Sat, 27 Jun 2009)

Log Message:
-----------
This commit fixes issue 2810620

Modified Paths:
--------------
    trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/EditTaxonLabelController.java
    trunk/treebase-web/src/main/webapp/WEB-INF/pages/editTaxonLabel.jsp

Modified: trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/EditTaxonLabelController.java
===================================================================

--- trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/EditTaxonLabelController.java	2009-06-26 15:41:18 UTC (rev 132)
+++ trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/EditTaxonLabelController.java	2009-06-27 07:04:54 UTC (rev 133)
@@ -225,12 +225,23 @@
 			}
 			else {
 				// 2b
-				Integer ncbiId = getTaxonLabelService().findNcbiTaxIdByUBIOTaxId(manualId);
-				String ncbiPreferredName = getTaxonLabelService().getNCBIPreferredName(ncbiId.toString());
-				Taxon newTaxon = new Taxon(ncbiPreferredName,manualId,ncbiId);
+				TaxonLabelService taxonLabelService = getTaxonLabelService();
+				Integer ncbiId = taxonLabelService.findNcbiTaxIdByUBIOTaxId(manualId);	
+				Taxon newTaxon = null;
+				TaxonVariant newVariant = null;
+				if ( null != ncbiId ) {
+					String ncbiPreferredName = taxonLabelService.getNCBIPreferredName(ncbiId.toString());
+					newTaxon = new Taxon(ncbiPreferredName,manualId,ncbiId);
+					newVariant = new TaxonVariant(manualId,taxonLabel.getTaxonLabel(),ncbiPreferredName,"canonical form");					
+				}				
+				else {
+					newTaxon = new Taxon();
+					newTaxon.setName(taxonLabel.getTaxonLabel());
+					newTaxon.setUBioNamebankId(manualId);					
+					newVariant = new TaxonVariant(manualId,taxonLabel.getTaxonLabel(),taxonLabel.getTaxonLabel(),"canonical form");
+				}
+				newVariant.setTaxon(newTaxon);
 				getTaxonHome().store(newTaxon);
-				TaxonVariant newVariant = new TaxonVariant(manualId,taxonLabel.getTaxonLabel(),ncbiPreferredName,"canonical form");
-				newVariant.setTaxon(newTaxon);
 				getTaxonHome().store(newVariant);
 				variant = newVariant;
 			}

Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/editTaxonLabel.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/editTaxonLabel.jsp	2009-06-26 15:41:18 UTC (rev 132)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/editTaxonLabel.jsp	2009-06-27 07:04:54 UTC (rev 133)
@@ -71,17 +71,25 @@
 			<c:set var="counter" value="${counter+1}"/>
 		</c:forEach>
 		<div>
+			<input type="radio" name="taxonvariantid" id="textBoxRadio" value="-1"/>
+			I did a uBio lookup for 
+			<spring:bind path="txnlabel.taxonLabel">
+				<a href="http://www.ubio.org/browser/search.php?search_all=<c:out value="${status.value}"/>" title="uBio taxonomy" target="_new">
+					<img src="<fmt:message key="icons.weblink"/>" class="iconButton"/><c:out value="${status.value}"/></a>
+			</spring:bind>		
+			and here is the namebank id:
+			<script type="text/javascript">
+				function selectRadio(textBoxRadio) {
+					alert($(textBoxRadio));
+					$(textBoxRadio).checked = true;
+				}
+			</script>
+			<input style="width:100px" class="textCell" type="text" name="manualid" onchange="selectRadio('textBoxRadio')" value=""/> 
+		</div>
+		<div>
 			<input type="radio" name="taxonvariantid" value="-1" 
-				<c:if test="${counter==0}">checked="checked"</c:if> /><em>no association</em>
-		</div>
-		or enter taxon id by hand:
-		<input style="width:100px" class="textCell" type="text" name="manualid" value=""/> 
-		from
-		<spring:bind path="txnlabel.taxonLabel">
-			<a href="http://www.ubio.org/browser/search.php?search_all=<c:out value="${status.value}"/>" title="uBio taxonomy" target="_new">
-				<img src="<fmt:message key="icons.weblink"/>" class="iconButton"/> uBio
-			</a>
-		</spring:bind>
+				<c:if test="${counter==0}">checked="checked"</c:if> /> <em>no association</em>
+		</div>		
 	</fieldset>    	
 	<input type="submit" name="Update" value="<fmt:message key="button.update"/>" />
 	<input type="submit" name="_cancel" value="<fmt:message key="button.cancel"/>" />	    


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.




Thread: [Treebase-guts] SF.net SVN: treebase:[133] trunk/treebase-web/src/main

treebase-guts