treebase-guts Mailing List for TreeBASE (Page 56)

SourceForge Headquarters 225 Broadway Suite 1600 San Diego, CA 92101 +1 (858) 422-6466

Revision: 111
          http://treebase.svn.sourceforge.net/treebase/?rev=111&view=rev
Author:   rvos
Date:     2009-06-25 02:48:12 +0000 (Thu, 25 Jun 2009)

Log Message:
-----------
Refactored to use TreebaseIDString and NamespacedGUID classes as opposed to direct ID string manipulation

Modified Paths:
--------------
    trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/PhyloWSController.java

Modified: trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/PhyloWSController.java
===================================================================

--- trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/PhyloWSController.java	2009-06-25 02:45:59 UTC (rev 110)
+++ trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/PhyloWSController.java	2009-06-25 02:48:12 UTC (rev 111)
@@ -6,7 +6,10 @@
 import org.springframework.web.servlet.ModelAndView;
 import org.springframework.web.servlet.mvc.Controller;
 
+import org.cipres.treebase.NamespacedGUID;
+import org.cipres.treebase.TreebaseIDString;
 import org.cipres.treebase.TreebaseUtil;
+import org.cipres.treebase.TreebaseIDString.MalformedTreebaseIDString;
 import org.cipres.treebase.domain.matrix.Matrix;
 import org.cipres.treebase.domain.matrix.MatrixService;
 import org.cipres.treebase.domain.study.Study;
@@ -20,31 +23,28 @@
 	private PhyloTreeService mPhyloTreeService;
 	private StudyService mStudyService;
     
-    private String createUrl(String prefix, String objectId) throws Exception {
+    private String createUrl(String prefix, Long objectId) throws Exception {
     	String url = "";
     	String base = "/treebase-web/search/study";
-    	if ( prefix.equalsIgnoreCase("study") ) {
-			Long studyId = Long.parseLong(objectId);
-			Study study = getStudyService().findByID(studyId);
+    	if ( prefix.equals(TreebaseIDString.getPrefixForClass(Study.class)) ) {
+			Study study = getStudyService().findByID(objectId);
 			if ( study == null ) {
-				throw new ObjectNotFoundException("Can't find study " + studyId);
+				throw new ObjectNotFoundException("Can't find study " + objectId);
 			}    			    		
     		return base + "/summary.html?id=" + objectId;
     	}   
-    	else if ( prefix.equalsIgnoreCase("matrix") ) {
-    		Long matrixId = Long.parseLong(objectId);
-    		Matrix matrix = getMatrixService().findByID(matrixId);
+    	else if ( prefix.equals(TreebaseIDString.getPrefixForClass(Matrix.class)) ) {
+    		Matrix matrix = getMatrixService().findByID(objectId);
     		if ( matrix == null ) {
-    			throw new ObjectNotFoundException("Can't find matrix " + matrixId);
+    			throw new ObjectNotFoundException("Can't find matrix " + objectId);
     		}
     		Study study = matrix.getStudy();
     		return base + "/matrix.html?id=" + study.getId() + "&matrixid=" + objectId;
     	}
-    	else if ( prefix.equalsIgnoreCase("tree") ) {
-    		Long treeId = Long.parseLong(objectId);
-    		PhyloTree phyloTree = getPhyloTreeService().findByID(treeId);
+    	else if ( prefix.equals(TreebaseIDString.getPrefixForClass(PhyloTree.class)) ) {
+    		PhyloTree phyloTree = getPhyloTreeService().findByID(objectId);
     		if ( phyloTree == null ) {
-    			throw new ObjectNotFoundException("Can't find tree " + treeId);
+    			throw new ObjectNotFoundException("Can't find tree " + objectId);
     		}
     		Study study = phyloTree.getStudy();
     		return base + "/tree.html?id=" + study.getId() + "&treeid=" + objectId;
@@ -62,25 +62,28 @@
             	throw new InvalidRequestException(
             		"Invalid request '" 
             		+ pathInfo 
-            		+ "', should be /${class}/${id}");
+            		+ "', should be /${NamespacedGUID}");
             }
             String[] pathComponents = pathInfo.split("/");
-            if ( pathComponents.length != 3 ) {
+            if ( pathComponents.length != 2 ) {
             	throw new InvalidRequestException(
             		"Invalid request '" 
             		+ pathInfo 
-            		+ "', should be /${class}/${id}");
+            		+ "', should be /${NamespacedGUID}");
             }
-            String prefix = pathComponents[1];
-            String fullyQualifiedId = pathComponents[2];
-            String id = fullyQualifiedId.replaceAll(".*:[a-zA-Z]*","");  
-            if ( TreebaseUtil.isEmpty(req.getParameter("format")) ) {
-            	url = createUrl(prefix,id);
+            String[] idComponents = pathComponents[1].split("\\.");
+            NamespacedGUID namespacedGUID = new NamespacedGUID(idComponents[0]);
+            TreebaseIDString tbID = namespacedGUID.getTreebaseIDString();
+            if ( idComponents.length >= 2 && idComponents[1].equals("html") ) {
+            	url = createUrl(tbID.getTypePrefix(),tbID.getId());
             }
+            else if ( idComponents.length >= 2 ) {
+            	url = createDownloadUrl(tbID.getTypePrefix(),tbID.getId(),idComponents[1]);
+            }
             else {
-            	url = createDownloadUrl(prefix,id,req.getParameter("format"));
+            	url = "/treebase-web/search/study/anyObjectAsRDF.html?namespacedGUID=" + namespacedGUID.toString();
             }
-        } catch ( NumberFormatException e ) {
+        } catch ( MalformedTreebaseIDString e ) {
         	res.sendError(HttpServletResponse.SC_BAD_REQUEST, "Bad ID string: " + e.getMessage());
         } catch ( ObjectNotFoundException e ) {        	        	
         	res.sendError(HttpServletResponse.SC_NOT_FOUND, e.getMessage());
@@ -93,32 +96,31 @@
         }
         return null;
 	}
-	
-	private String createDownloadUrl(String prefix, String objectId, String format) throws Exception {
+
+	private String createDownloadUrl(String prefix, Long objectId, String format) throws Exception {
+		if ( format.equals("xml") ) {
+			format = "nexml";
+		}
     	String url = "";
     	StringBuffer base = new StringBuffer("/treebase-web/search");
-    	if ( prefix.equalsIgnoreCase("study") ) {
-			Long studyId = Long.parseLong(objectId);
-			Study study = getStudyService().findByID(studyId);
+    	if ( prefix.equals(TreebaseIDString.getPrefixForClass(Study.class)) ) {
+			Study study = getStudyService().findByID(objectId);
 			if ( study == null ) {
-				throw new ObjectNotFoundException("Can't find study " + studyId);
+				throw new ObjectNotFoundException("Can't find study " + objectId);
 			}    			    		
-    		//return base + "/summary.html?id=" + objectId;
     		return base
 				.append("/downloadAStudy.html?id=")
 				.append(objectId)
 				.append("&format=")
 				.append(format)
-				.toString();  			
+					.toString();  			
     	}   
-    	else if ( prefix.equalsIgnoreCase("matrix") ) {
-    		Long matrixId = Long.parseLong(objectId);
-    		Matrix matrix = getMatrixService().findByID(matrixId);
+    	else if ( prefix.equals(TreebaseIDString.getPrefixForClass(Matrix.class)) ) {
+    		Matrix matrix = getMatrixService().findByID(objectId);
     		if ( matrix == null ) {
-    			throw new ObjectNotFoundException("Can't find matrix " + matrixId);
+    			throw new ObjectNotFoundException("Can't find matrix " + objectId);
     		}
     		Study study = matrix.getStudy();
-    		//http://localhost:8080/treebase-web/search/downloadAMatrix.html?id=830&matrixid=263
     		return base
 				.append("/downloadAMatrix.html?id=")
 				.append(study.getId())
@@ -126,16 +128,14 @@
 				.append(objectId)
 				.append("&format=")
 				.append(format)
-				.toString();    		
+					.toString();    		
     	}
-    	else if ( prefix.equalsIgnoreCase("tree") ) {
-    		Long treeId = Long.parseLong(objectId);
-    		PhyloTree phyloTree = getPhyloTreeService().findByID(treeId);
+    	else if ( prefix.equals(TreebaseIDString.getPrefixForClass(PhyloTree.class)) ) {
+    		PhyloTree phyloTree = getPhyloTreeService().findByID(objectId);
     		if ( phyloTree == null ) {
-    			throw new ObjectNotFoundException("Can't find tree " + treeId);
+    			throw new ObjectNotFoundException("Can't find tree " + objectId);
     		}
     		Study study = phyloTree.getStudy();
-    		//http://localhost:8080/treebase-web/search/downloadATree.html?id=830&treeid=3983
     		return base
     			.append("/downloadATree.html?id=")
     			.append(study.getId())
@@ -143,7 +143,7 @@
     			.append(objectId)
     			.append("&format=")
     			.append(format)
-    			.toString();
+    				.toString();
     	}
     	return url;
 	}


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.




2009	Jan	Feb	Mar (1)	Apr (14)	May (36)	Jun (148)	Jul (33)	Aug (2)	Sep (17)	Oct (42)	Nov (137)	Dec (88)
2010	Jan (89)	Feb (80)	Mar (217)	Apr (76)	May (5)	Jun (39)	Jul (35)	Aug (4)	Sep (7)	Oct (14)	Nov (12)	Dec (9)
2011	Jan (6)	Feb (4)	Mar (11)	Apr (55)	May (90)	Jun (39)	Jul (15)	Aug (15)	Sep (23)	Oct (12)	Nov (17)	Dec (20)
2012	Jan (22)	Feb (63)	Mar	Apr (1)	May (6)	Jun (3)	Jul (1)	Aug (1)	Sep	Oct	Nov	Dec
2013	Jan (3)	Feb (6)	Mar	Apr	May	Jun (4)	Jul (1)	Aug (1)	Sep	Oct	Nov	Dec
2014	Jan	Feb	Mar	Apr (7)	May	Jun	Jul	Aug	Sep	Oct	Nov	Dec

treebase-guts Mailing List for TreeBASE (Page 56)

treebase-guts — Commit and tracker messages