Menu
▾
▴
treebase-devel
|
From: Rutger V. <rut...@gm...> - 2010-04-14 16:11:34
|
Am I being too cute if I call my talk "TreeBASE2: Rise of the Machines (-readable architecture)"? On Wed, Apr 14, 2010 at 4:58 PM, Rutger Vos <rut...@gm...> wrote: >> The only plan I've heard so far was Rutger planning a full talk around >> TreeBASE's ventures into semweb and linked data compatibility. Is that still >> on? That would presumably cover NeXML, and at least give basics on PhyloWS? > > Yes, yes and yes. > > -- > Dr. Rutger A. Vos > School of Biological Sciences > Philip Lyle Building, Level 4 > University of Reading > Reading > RG6 6BX > United Kingdom > Tel: +44 (0) 118 378 7535 > http://www.nexml.org > http://rutgervos.blogspot.com > -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
|
From: Rutger V. <rut...@gm...> - 2010-04-15 14:55:17
|
On Thu, Apr 15, 2010 at 3:09 PM, William Piel <wil...@ya...> wrote: > Isn't there a requirement to state the license? (does that have to go in the abstract?) I'm a bit unclear about this. I know there's a requirement to have an open source license, I'm not sure that means I'd have to mention it in the abstract. If I do, would it be OK to just say TreeBASE is released under a "BSD-style license"? I mean, isn't that where we stand right now? -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
|
From: Hilmar L. <hl...@ne...> - 2010-04-15 15:11:25
|
On Apr 15, 2010, at 10:55 AM, Rutger Vos wrote: > I know there's a requirement to have an open source license, I'm not > sure that means I'd have to mention it in the abstract. Yes, you should mention it in the abstract. (The documentation states that.) If you don't, reviewers (or committee members) have to go looking for it. > If I do, would it be OK to just say TreeBASE is released under a > "BSD-style license"? Why not say "BSD license"? Isn't it a BSD license? "BSD-style" sounds more wishy-washy than it is. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
|
From: Rutger V. <rut...@gm...> - 2010-04-15 15:17:27
|
Great, thanks, here's my opening sentence right now: TreeBASE[1] is a database of peer-reviewed phylogenetic data and metadata. 1. http://treebase.org, source code available at http://sf.net/projects/treebase/ under a BSD license. So it's the first footnote. I suppose that's OK? On Thu, Apr 15, 2010 at 4:11 PM, Hilmar Lapp <hl...@ne...> wrote: > > On Apr 15, 2010, at 10:55 AM, Rutger Vos wrote: > >> I know there's a requirement to have an open source license, I'm not sure >> that means I'd have to mention it in the abstract. > > Yes, you should mention it in the abstract. (The documentation states that.) > If you don't, reviewers (or committee members) have to go looking for it. > >> If I do, would it be OK to just say TreeBASE is released under a >> "BSD-style license"? > > Why not say "BSD license"? Isn't it a BSD license? "BSD-style" sounds more > wishy-washy than it is. > > -hilmar > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : > =========================================================== > > > > -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
|
From: Hilmar L. <hl...@ne...> - 2010-04-15 15:21:10
|
On Apr 15, 2010, at 11:17 AM, Rutger Vos wrote: > here's my opening sentence right now: TreeBASE[1] is a > database of peer-reviewed phylogenetic data and metadata. > > 1. http://treebase.org, source code available at > http://sf.net/projects/treebase/ under a BSD license. > > So it's the first footnote. I suppose that's OK? Yes. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
|
From: Rutger V. <rut...@gm...> - 2010-04-15 15:24:18
Attachments:
TreeBASE2.pdf
|
Maybe it is just the timezone I'm in but I feel like I'm about to turn into a pumpkin. In half an hour I'm going to upload the attached abstract to the registration site. OK? On Thu, Apr 15, 2010 at 4:20 PM, Hilmar Lapp <hl...@ne...> wrote: > > On Apr 15, 2010, at 11:17 AM, Rutger Vos wrote: > >> here's my opening sentence right now: TreeBASE[1] is a >> database of peer-reviewed phylogenetic data and metadata. >> >> 1. http://treebase.org, source code available at >> http://sf.net/projects/treebase/ under a BSD license. >> >> So it's the first footnote. I suppose that's OK? > > > Yes. > > -hilmar > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : > =========================================================== > > > > -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
|
From: William P. <wil...@ya...> - 2010-04-15 20:32:00
Attachments:
treebasedemo.pdf
|
On Apr 15, 2010, at 3:58 PM, Hilmar Lapp wrote: > Note that software bazaar submissions aren't due before June. > > -hilmar Oh! whoops. Well, I wrote something up anyway... see attached. Please let me know if your Comments are welcome. Let me know if anyone's middle initials need fixing. bp |
|
From: Rutger V. <rut...@gm...> - 2010-04-15 21:46:17
|
> Comments are welcome. Let me know if anyone's middle initials need fixing. Rutger A. Vos, if you don't mind. -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
|
From: William P. <wil...@ya...> - 2010-04-22 18:32:59
|
Hi guys, Can we do a new build? Several improvements include: - our analysis GUI is now compatible with IE8 - our analysis step download is working again, this time a single taxon block is referenced by both input and output objects, and taxon labels are sorted so that PAUP does not scramble names and matrix rows. - charsets and codonpossets now reference specific character blocks - TreeBASE ids are now presented as URIs regards, Bill |
|
From: Vladimir G. <vla...@du...> - 2010-04-22 18:55:52
|
Do you want to see it on treebase-dev first or on production right away? --VG On Apr 22, 2010, at 2:32 PM, William Piel wrote: > > Hi guys, > > Can we do a new build? > > Several improvements include: > > - our analysis GUI is now compatible with IE8 > - our analysis step download is working again, this time a single > taxon block is referenced by both input and output objects, and > taxon labels are sorted so that PAUP does not scramble names and > matrix rows. > - charsets and codonpossets now reference specific character blocks > - TreeBASE ids are now presented as URIs > > regards, > > Bill > > > > ------------------------------------------------------------------------------ > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel |
|
From: William P. <wil...@ya...> - 2010-04-22 19:11:06
|
On Apr 22, 2010, at 2:55 PM, Vladimir Gapeyev wrote: > Do you want to see it on treebase-dev first or on production right away? It can go right away because we've been testing it on our deployment at the Peabody. bp |
|
From: Hilmar L. <hl...@ne...> - 2010-04-14 17:23:31
|
On Apr 14, 2010, at 12:11 PM, Rutger Vos wrote: > Am I being too cute if I call my talk "TreeBASE2: Rise of the Machines > (-readable architecture)"? Not if you leave out the stuff in parentheses. Let them guess. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
|
From: Rutger V. <rut...@gm...> - 2010-04-15 11:32:47
Attachments:
TreeBASE2.pdf
|
Hi all, please find attached a first draft of my abstract for iEvoBio. In terms of dividing up the work I think I will spend most time talking about PhyloWS and NeXML (both as relevant for TreeBASE) and not that much time talking about CDAO per se. In a separate mail I have sent all relevant people* I have put a link to a web folder that contains an editable version of this abstract, and the powerpoint slides which I will be adapting for iEvoBio (they're from the CIPRES all-hands meeting so they'll need some work). All comments very welcome! Rutger * that I could think of in the spur of the moment. Please let me know if I accidentally left you out! On Wed, Apr 14, 2010 at 5:11 PM, Rutger Vos <rut...@gm...> wrote: > Am I being too cute if I call my talk "TreeBASE2: Rise of the Machines > (-readable architecture)"? > > On Wed, Apr 14, 2010 at 4:58 PM, Rutger Vos <rut...@gm...> wrote: >>> The only plan I've heard so far was Rutger planning a full talk around >>> TreeBASE's ventures into semweb and linked data compatibility. Is that still >>> on? That would presumably cover NeXML, and at least give basics on PhyloWS? >> >> Yes, yes and yes. >> >> -- >> Dr. Rutger A. Vos >> School of Biological Sciences >> Philip Lyle Building, Level 4 >> University of Reading >> Reading >> RG6 6BX >> United Kingdom >> Tel: +44 (0) 118 378 7535 >> http://www.nexml.org >> http://rutgervos.blogspot.com >> > > > > -- > Dr. Rutger A. Vos > School of Biological Sciences > Philip Lyle Building, Level 4 > University of Reading > Reading > RG6 6BX > United Kingdom > Tel: +44 (0) 118 378 7535 > http://www.nexml.org > http://rutgervos.blogspot.com > -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
×
Want the latest updates on software, tech news, and AI?
Get latest updates about software, tech news, and AI from SourceForge directly in your inbox once a month.
Thanks for helping keep SourceForge clean.
X