From: William P. <wil...@ya...> - 2010-04-07 19:40:11
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On Apr 7, 2010, at 12:48 PM, Jon Auman wrote: > Hi Bill, > > Sorry, I did get a page, but I was away from my computer. > > The application crashes at least once a week, sometimes more often. I've been thinking that maybe we should restart tomcat every night? If you like this idea, any preference in time? > > Thanks, > Jon Do you think this a memory leak issue? I guess 3AM is probably the best time for US users. (maybe we should consult our stats?) bp |
From: Jon A. <jon...@ne...> - 2010-04-07 22:02:25
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Yes, I'm fairly certain it is. I've not run the application for a full week without it crashing. Yes, 3 AM is a relatively low time in activity. I'll restart it then and see how it goes. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 Hours Pages Hits Bandwidth 00 1912 7648 94.36 MB 01 1931 5751 68.41 MB 02 1677 4950 60.87 MB 03 1454 4984 58.54 MB 04 2039 9859 102.12 MB 05 2288 10542 101.41 MB 06 2226 10524 104.61 MB 07 2849 15566 153.98 MB 08 2661 13736 146.83 MB 09 3205 15001 176.80 MB 10 3400 16562 208.83 MB 11 2757 14737 199.35 MB Hours Pages Hits Bandwidth 12 2834 15378 166.41 MB 13 3631 20301 190.78 MB 14 4044 21818 191.62 MB 15 4311 27330 217.16 MB 16 3406 18848 145.95 MB 17 2859 13510 149.14 MB 18 2430 11675 120.49 MB 19 1904 7659 91.29 MB 20 1840 7308 83.85 MB 21 2991 12158 113.13 MB 22 3105 16002 138.05 MB 23 2142 9379 82.46 MB -Jon On Apr 7, 2010, at 3:39 PM, William Piel wrote: > > On Apr 7, 2010, at 12:48 PM, Jon Auman wrote: > >> Hi Bill, >> >> Sorry, I did get a page, but I was away from my computer. >> >> The application crashes at least once a week, sometimes more often. I've been thinking that maybe we should restart tomcat every night? If you like this idea, any preference in time? >> >> Thanks, >> Jon > > Do you think this a memory leak issue? > > I guess 3AM is probably the best time for US users. (maybe we should consult our stats?) > > bp > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel ------------------------------------------------------- Jon Auman Systems Administrator National Evolutionary Synthesis Center Duke University http:www.nescent.org jon...@ne... ------------------------------------------------------ |
From: William P. <wil...@ya...> - 2010-04-08 17:56:20
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Hi Jon, Can we treebase-dev up and running? http://treebasedb-dev.nescent.org/treebase-web/home.html I'm trying to test a bug-fix that Youjun just made, but first I have to upload data to the dev database, and I can't do it without the dev build at NESCent (because Youjun's build does not have Mesquite). bp |
From: Vladimir G. <vla...@du...> - 2010-04-08 18:32:09
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Bill, the url is http://treebase-dev.nescent.org/treebase-web -- it has been up. --VG On Apr 8, 2010, at 1:56 PM, William Piel wrote: > Hi Jon, > > Can we treebase-dev up and running? > > http://treebasedb-dev.nescent.org/treebase-web/home.html > > I'm trying to test a bug-fix that Youjun just made, but first I have > to upload data to the dev database, and I can't do it without the > dev build at NESCent (because Youjun's build does not have Mesquite). > > bp > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel |
From: William P. <wil...@ya...> - 2010-04-08 18:36:02
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On Apr 8, 2010, at 2:32 PM, Vladimir Gapeyev wrote: > Bill, the url is http://treebase-dev.nescent.org/treebase-web oh, whoops. sorry about that. bp |
From: Jon A. <jon...@du...> - 2010-03-29 20:32:01
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Tomcat also hard crashed twice last week. I suspect there are memory leaks in the application. Maybe I should restart it once a day? Anybody object? -Jon On Mar 29, 2010, at 4:29 PM, Jon Auman wrote: > It appears to be an issue with tomcat. It started over the weekend, so I'm assuming there is an issue with the last build. This query runs for hours: > > delete from matrixelement where matrixelement_id IN (select m.matrixelement_id from matrixelement m, MATRIXCOLUMN c where m.MATRIXCOLUMN_ID = c > .MATRIXCOLUMN_ID and c.MATRIX_ID = $1) > > And I'mn seeing this in the tomcat logs during the hang: > > [http-8080-Processor8] DEBUG org.cipres.treebase.domain.search.StudySearchResults - discardUnpublished: before: 7; after: 7 > > > I'll > > -Jon > > > > On Mar 29, 2010, at 4:19 PM, William Piel wrote: > >> times-out with proxy error for simple searches. >> >> bp >> >> > > ------------------------------------------------------- > Jon Auman > Systems Administrator > National Evolutionary Synthesis Center > Duke University > http:www.nescent.org > jon...@ne... > ------------------------------------------------------ > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev_______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel ------------------------------------------------------- Jon Auman Systems Administrator National Evolutionary Synthesis Center Duke University http:www.nescent.org jon...@ne... ------------------------------------------------------ |