Dear TreeBASEer,
Here is the current situation about TreeBASE test, there are still 7 fails
left:
1.
testCreateRowSegments(org.cipres.treebase.service.matrix.RowSegmentServiceImplTest)
2. testAddDelete(org.cipres.treebase.service.matrix.MatrixServiceImplTest)
3. testCreateDelete(org.cipres.treebase.dao.tree.PhyloTreeDAOTest)
4.
testFindTreeBlocksByNexusFileName(org.cipres.treebase.dao.tree.PhyloTreeDAOTest)
5. testLoadPhyloDataSet(org.cipres.treebase.service.nexus.NexusParserTest)
6. testAddDelete(org.cipres.treebase.service.study.StudyServiceImplTest)
7.
testMesqutieFolderDir(org.cipres.treebase.domain.nexus.NexusMesquiteDataSetTest)
Right now, I am working on the No.1
No. 2,3 and 6 related to the hibernate_sequence issue, I expect they will
disappear after we solve the problem;
No, 4 related to the broken foreign key that Bill mentioned in his email,
and should be solved by clean the table;
Rutger, please Check at the No, 5 and 7, they both related to mesqiute .
No. 5 the NexusPaserTest call into
org.cipres.datatypes.PhyloDataset.initializeFromStringOrFile and it throw
back a null pointer exception, this class is out of the scope of treebase.
No. 7 Spring complained: "There are 3 beans of type
[org.cipres.treebase.domain.nexus.NexusService] available for autowiring by
type: [nexusService, nexmlService, rdfaService]." Spring don't know which
one to use. Do we need all of them in the config file?
Youjun
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