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From: Hilmar L. <hl...@ne...> - 2010-01-27 19:42:31
|
So does this mean that Hibernate assumes that no-one else is touching
the database while it is running.
Does this then also mean that we cannot touch the database (such as
for inserting data) through any other means than the running instance
of Hibernate while such an Hibernate is running? I.e., a Java program
that also uses Hibernate but runs as a separate process won't do
either. Is this a situation that we can live with, or does this need
to be remedied?
My gut feeling is the latter, but I'd like to hear people's thoughts.
-hilmar
On Jan 27, 2010, at 1:46 PM, Vladimir Gapeyev wrote:
>
> Here is what happened to user_id and person_id in an empty database
> after I created a handful new users, starting with
> hibernate_sequence = 1000 (that's ONE thousand)
>
> user_id username person_id hibernate_sequence
> 10000 "vgapeyev"; 10010 1001
> 10001 "vgapeyev2"; 10011 1001
> 10002 "vgapeyev3"; 10012 1001
> 10020 "vgapeyev4"; 10030 1003
>
> That is, Hibernate uses values from hibernate_sequence to generate
> PK ids in some cleverly mysterious ways.
>
> Consequently, the current declarations of PK columns like
> user_id bigint NOT NULL DEFAULT
> nextval('hibernate_sequence'::regclass);
>
> may deceive someone that an INSERT of a row without an ID explicitly
> specified would be ok, since the DB appears to know how to do the
> right thing.
>
> So, I'd propose to drop the default declarations, to avoid the
> deception:
>
> user_id bigint NOT NULL;
>
> --Vladimir
>
> ------------------------------------------------------------------------------
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> http://p.sf.net/sfu/theplanet-com_______________________________________________
> Treebase-devel mailing list
> Tre...@li...
> https://lists.sourceforge.net/lists/listinfo/treebase-devel
--
===========================================================
: Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org :
===========================================================
|
|
From: Vladimir G. <vla...@du...> - 2010-01-27 18:46:25
|
Here is what happened to user_id and person_id in an empty database
after I created a handful new users, starting with hibernate_sequence
= 1000 (that's ONE thousand)
user_id username person_id hibernate_sequence
10000 "vgapeyev"; 10010 1001
10001 "vgapeyev2"; 10011 1001
10002 "vgapeyev3"; 10012 1001
10020 "vgapeyev4"; 10030 1003
That is, Hibernate uses values from hibernate_sequence to generate PK
ids in some cleverly mysterious ways.
Consequently, the current declarations of PK columns like
user_id bigint NOT NULL DEFAULT
nextval('hibernate_sequence'::regclass);
may deceive someone that an INSERT of a row without an ID explicitly
specified would be ok, since the DB appears to know how to do the
right thing.
So, I'd propose to drop the default declarations, to avoid the
deception:
user_id bigint NOT NULL;
--Vladimir
|
|
From: William P. <wil...@ya...> - 2010-01-27 17:31:59
|
On Jan 27, 2010, at 11:48 AM, Hilmar Lapp wrote: > The TB code *already used* a single sequence. I guess the change is > now that the study ID is drawn from that sequence too - apparently > previously even Hibernate used a separate sequence for that? I'm sure > if desired this can be restored. All existing data (i.e. what was migrated up until Jan 09) have study_id, phylotree_id, matrix_id, etc, that are integers each one increasing one by one. So I believe that TB code previously used table-specific sequences rather than a single source of integers. While I'd prefer the study_id to increase one-by-one (mainly because a number like "160000022251" is so long that it's prone to people making typos in their manuscripts) I wouldn't want this to delay deployment. (and people can always use copy-paste to avoid typos..) bp |
|
From: Hilmar L. <hl...@ne...> - 2010-01-27 16:48:25
|
The TB code *already used* a single sequence. I guess the change is now that the study ID is drawn from that sequence too - apparently previously even Hibernate used a separate sequence for that? I'm sure if desired this can be restored. -hilmar On Jan 27, 2010, at 10:06 AM, William Piel wrote: > > On Jan 26, 2010, at 5:47 PM, Vladimir Gapeyev wrote: > >> The new study / submission that I created for testing purposes is >> being referred to as "submission 160000013040" or "Study >> 160000013050". Do we agree it is a feature, not a bug, that TB2 >> accession numbers will be large and grow by huge leaps from one study >> to the next? > > I guess this is inevitable by virtue of using a single sequence for > all tables. I would have preferred to issue smaller accession > numbers, but I gather there were good reasons to use the single > sequence. > > bp > > > > ------------------------------------------------------------------------------ > The Planet: dedicated and managed hosting, cloud storage, colocation > Stay online with enterprise data centers and the best network in the > business > Choose flexible plans and management services without long-term > contracts > Personal 24x7 support from experience hosting pros just a phone call > away. > http://p.sf.net/sfu/theplanet-com > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
|
From: youjun g. <you...@ya...> - 2010-01-27 16:45:35
|
Dear All, I am investigating the cause of cascade delete failed on submission 22. There are two issues that confuse me. 1. Why we need table sub_taxonlabel, sub_treeblock and sub_matrix (a typical many to many setup)? but the relationship between taxonlabel, treeblock and matrix to submission is many to one. this three unnecessary bridge tables can hurt the performance. 2. The deletion of a phylotree node phylotreenode table have 3 foreign keys point to the same table parent_id, child_id and sibling_id. To delete a node all those foreign key value which point to the deleting node need be set to "null" first, otherwise the postgresql will complain. When delete all the node in a tree, TB code issued two lines of sql: > "update phylotree set rootNode_id = null where phylotree_id = :treeID"; > "delete from phylotreenode where phylotree_id = :treeID"; > This should not work unless the foreigns keys allow cascade delete. YOujun |
|
From: William P. <wil...@ya...> - 2010-01-27 15:21:03
|
On Jan 26, 2010, at 5:47 PM, Vladimir Gapeyev wrote: > The new study / submission that I created for testing purposes is > being referred to as "submission 160000013040" or "Study > 160000013050". Do we agree it is a feature, not a bug, that TB2 > accession numbers will be large and grow by huge leaps from one study > to the next? I guess this is inevitable by virtue of using a single sequence for all tables. I would have preferred to issue smaller accession numbers, but I gather there were good reasons to use the single sequence. bp |
|
From: William P. <wil...@ya...> - 2010-01-27 15:19:02
|
I noticed this error too. For what it's worth, uploading nexus files that only contain tree blocks works fine -- so headless Mesquite is good with trees. This SQL error only applies to storing matrices. Anyone know what the GAP field is? I'm guessing that if a row x column element in a matrix has a gap (e.g. "-") then the boolean is set to true, but if the row x column element is a "missing" value (e.g. "?") or any other character, then it gets a DISCRETECHARSTATE_ID that matches to a set of records that lists all character states assigned to that element. But that's just a guess. bp On Jan 26, 2010, at 5:23 PM, Vladimir Gapeyev wrote: > > When I try to upload a NEXUS file at http://treebase-dev.nescent.org:6666/treebase-web/user/uploadFile.html, I get a stack dump. > The dump mentions SQL insert > > INSERT INTO MATRIXELEMENT > (TYPE, MATRIXELEMENT_ID, VERSION, GAP, MATRIXCOLUMN_ID, MATRIXROW_ID, DISCRETECHARSTATE_ID, ELEMENT_ORDER) VALUES > ('D', default, 1, 0, 16000002157, 0, 4, 0) > > When I try to run it by hand I get > > ERROR: column "gap" is of type boolean but expression is of type integer > LINE 3: ('D', default, 1, 0, 16000002157, 0, 4, 0) > ^ > HINT: You will need to rewrite or cast the expression. > > --Vladimir > |
|
From: Vladimir G. <vga...@ne...> - 2010-01-26 22:58:10
|
The new TB2 instance that we run at http://treebase-dev.nescent.org/treebase-web , since it runs as Tomcat hidden behind Apache, appears to expose problems with some URLs generated on pages. Go to any study page, e.g., http://treebase-dev.nescent.org/treebase-web/search/study/summary.html?id=1234 and check the links appearing on its various tabs. Most links have form (1) http://localhost:8380/treebase-web/phylows/study/TB2:S1234, exposing the hidden tomcat. They do not work, since Tomcat is not visible to the world. Some links (e.g., file downloads on the Trees tab) have form (2) http://treebase-dev.nescent.org/treebase-web/phylows/tree/TB2:Tr1902?format=nexml , which is the correct, working one. It should be possible to turn all (1)s into (2)s. --Vladimir |
|
From: Vladimir G. <vga...@ne...> - 2010-01-26 22:47:26
|
The new study / submission that I created for testing purposes is being referred to as "submission 160000013040" or "Study 160000013050". Do we agree it is a feature, not a bug, that TB2 accession numbers will be large and grow by huge leaps from one study to the next? --VG |
|
From: Vladimir G. <vga...@ne...> - 2010-01-26 22:24:38
|
I was testing the web app at treebase-dev.nescent.org (which runs a WAR that I built locally, but connects to the same DB as /treebase- dev.nescent.org:6666 does). When I try to upload a NEXUS file at http://treebase-dev.nescent.org/treebase-web/user/uploadFile.html , java.lang.StackOverflowError, with the dump (below) that looks like an infinite chain of recursive calls inside mesquite. Please help me and Jon pinpoint the problem here.... We both were under the impression that all Mesquite dependencies have now been hidden inside the WAR, so that there is no need to do anything special about Mesquite if one wants to install TB2 on a new server. The wiki page https://sourceforge.net/apps/mediawiki/treebase/index.php?title=HeadlessMesquite , however, still talks about all the intricacies of TB2-Mesquite interaction. Which is right? --Vladimir Uncaught Exception Encountered java.lang.StackOverflowError at sun.nio.cs.UTF_8$Encoder.encodeLoop(UTF_8.java:466) at java.nio.charset.CharsetEncoder.encode(CharsetEncoder.java:561) at java.lang.StringCoding$StringEncoder.encode(StringCoding.java:258) at java.lang.StringCoding.encode(StringCoding.java:290) at java.lang.String.getBytes(String.java:954) at java.io.FileOutputStream.open(Native Method) at java.io.FileOutputStream.(FileOutputStream.java:209) at java.io.FileOutputStream.(FileOutputStream.java:131) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2643) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2650) at mesquite.lib.MesquiteModule.loglnNoEcho(MesquiteModule.java:1003) at mesquite.lib.MesquiteModule.logln(MesquiteModule.java:971) at mesquite.lib.Debugg.println(Debugg.java:29) at mesquite.lib.MesquiteFile.writeToLog(MesquiteFile.java:2... [truncated message content] |
|
From: Vladimir G. <vga...@ne...> - 2010-01-26 22:23:56
|
When I try to upload a NEXUS file at http://treebase-dev.nescent.org:6666/treebase-web/user/uploadFile.html , I get a stack dump. The dump mentions SQL insert INSERT INTO MATRIXELEMENT (TYPE, MATRIXELEMENT_ID, VERSION, GAP, MATRIXCOLUMN_ID, MATRIXROW_ID, DISCRETECHARSTATE_ID, ELEMENT_ORDER) VALUES ('D', default, 1, 0, 16000002157, 0, 4, 0) When I try to run it by hand I get ERROR: column "gap" is of type boolean but expression is of type integer LINE 3: ('D', default, 1, 0, 16000002157, 0, 4, 0) ^ HINT: You will need to rewrite or cast the expression. --Vladimir |
|
From: Vladimir G. <vga...@ne...> - 2010-01-26 22:00:21
|
On Jan 26, 2010, at 9:18 AM, youjun guo wrote:
> Thanks Vladimir,
>
> The sequence works, and MatrixServiceImplTest problem solved.
>
When I run 'mvn test', I get
Tests in error:
testFindMatricesByTaxon
(org.cipres.treebase.service.taxon.TaxonLabelServiceImplTest)
testFindTaxonVariantWithSubstring
(org.cipres.treebase.service.taxon.TaxonLabelServiceImplTest)
testSetAuthors(org.cipres.treebase.domain.study.CitationTest)
testUpdateNewickString(org.cipres.treebase.domain.tree.PhyloTreeTest)
testDelete(org.cipres.treebase.dao.admin.PersonDAOTest)
testFindByID(org.cipres.treebase.dao.admin.PersonDAOTest)
testFindMatricesByTaxonLabel
(org.cipres.treebase.domain.taxon.TaxonLabelTest)
testFindMatricesByTaxonVariant
(org.cipres.treebase.domain.taxon.TaxonLabelTest)
testConvertToMatrices
(org.cipres.treebase.domain.search.SearchResultsTest)
testConvertFromMatrices
(org.cipres.treebase.domain.search.SearchResultsTest)
testConvertToTrees(org.cipres.treebase.domain.search.SearchResultsTest)
testConvertFromTrees
(org.cipres.treebase.domain.search.SearchResultsTest)
Tests run: 263, Failures: 0, Errors: 12, Skipped: 0
Do you get the same or there is something wrong on my side?
--VG
|
|
From: Rutger V. <rut...@gm...> - 2010-01-26 16:31:38
|
That's great news! On Tuesday, January 26, 2010, youjun guo <you...@ya...> wrote: > Thanks Vladimir, > > The sequence works, and MatrixServiceImplTest problem solved. > > Youjun > > On Fri, Jan 22, 2010 at 6:34 PM, Vladimir Gapeyev <vga...@ne...> wrote: > As of late afternoon Fri Jan 22, all tables in treebase- > dev.nescent.org/treebasedev draw their PK ids from hibernate_sequence, > which was updated to start with 16000000000. > > Running 'mvn test' seemingly hangs forever on > org.cipres.treebase.service.matrix.MatrixServiceImplTest. This might > be due to an intrinsic problem with the test, or maybe because the > test's transaction bumped into someone else's transaction? [I did > manage to run this test successfully individually earlier in the day, > but that time only 3 tables were switched to hibernate_sequence.] > > I see a couple that could be done to verify success: > - Check that unit tests now execute correctly (Youjun?) > - Check that data entry operations from UI work (Bill?) > > > A few more remarks: > > - Repeating the sequence re-targeting procedure on another db > instance will take me about an hour (there is manual work > involved). It's not too bad, but still means we should perform it > on all instances as soon as treebasedev is confirmed to function > correctly. > > - The huge starting number for hibernate_sequence is probably due to > tests. This suggests we should never run tests on the production > instance. > > - All sequences but hibernate_sequence can now be dropped, I think. > > > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts the > world's best and brightest in the field, creating opportunities for Conference > attendees to learn about information security's most important issues through > interactions with peers, luminaries and emerging and established companies. > http://p.sf.net/sfu/rsaconf-dev2dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
|
From: Hilmar L. <hl...@ne...> - 2010-01-26 15:16:32
|
Awesome! One more check mark on the way to release. -hilmar On Jan 26, 2010, at 9:18 AM, youjun guo wrote: > Thanks Vladimir, > > The sequence works, and MatrixServiceImplTest problem solved. > > Youjun > > On Fri, Jan 22, 2010 at 6:34 PM, Vladimir Gapeyev <vga...@ne... > > wrote: > As of late afternoon Fri Jan 22, all tables in treebase- > dev.nescent.org/treebasedev draw their PK ids from hibernate_sequence, > which was updated to start with 16000000000. > > Running 'mvn test' seemingly hangs forever on > org.cipres.treebase.service.matrix.MatrixServiceImplTest. This might > be due to an intrinsic problem with the test, or maybe because the > test's transaction bumped into someone else's transaction? [I did > manage to run this test successfully individually earlier in the day, > but that time only 3 tables were switched to hibernate_sequence.] > > I see a couple that could be done to verify success: > - Check that unit tests now execute correctly (Youjun?) > - Check that data entry operations from UI work (Bill?) > > > A few more remarks: > > - Repeating the sequence re-targeting procedure on another db > instance will take me about an hour (there is manual work > involved). It's not too bad, but still means we should perform it > on all instances as soon as treebasedev is confirmed to function > correctly. > > - The huge starting number for hibernate_sequence is probably due to > tests. This suggests we should never run tests on the production > instance. > > - All sequences but hibernate_sequence can now be dropped, I think. > > > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts > the > world's best and brightest in the field, creating opportunities for > Conference > attendees to learn about information security's most important > issues through > interactions with peers, luminaries and emerging and established > companies. > http://p.sf.net/sfu/rsaconf-dev2dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > ------------------------------------------------------------------------------ > The Planet: dedicated and managed hosting, cloud storage, colocation > Stay online with enterprise data centers and the best network in the > business > Choose flexible plans and management services without long-term > contracts > Personal 24x7 support from experience hosting pros just a phone call > away. > http://p.sf.net/sfu/theplanet-com_______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
|
From: youjun g. <you...@ya...> - 2010-01-26 14:48:01
|
Thanks Vladimir, The sequence works, and MatrixServiceImplTest problem solved. Youjun On Fri, Jan 22, 2010 at 6:34 PM, Vladimir Gapeyev <vga...@ne...>wrote: > As of late afternoon Fri Jan 22, all tables in treebase- > dev.nescent.org/treebasedev draw their PK ids from hibernate_sequence, > which was updated to start with 16000000000. > > Running 'mvn test' seemingly hangs forever on > org.cipres.treebase.service.matrix.MatrixServiceImplTest. This might > be due to an intrinsic problem with the test, or maybe because the > test's transaction bumped into someone else's transaction? [I did > manage to run this test successfully individually earlier in the day, > but that time only 3 tables were switched to hibernate_sequence.] > > I see a couple that could be done to verify success: > - Check that unit tests now execute correctly (Youjun?) > - Check that data entry operations from UI work (Bill?) > > > A few more remarks: > > - Repeating the sequence re-targeting procedure on another db > instance will take me about an hour (there is manual work > involved). It's not too bad, but still means we should perform it > on all instances as soon as treebasedev is confirmed to function > correctly. > > - The huge starting number for hibernate_sequence is probably due to > tests. This suggests we should never run tests on the production > instance. > > - All sequences but hibernate_sequence can now be dropped, I think. > > > > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts the > world's best and brightest in the field, creating opportunities for > Conference > attendees to learn about information security's most important issues > through > interactions with peers, luminaries and emerging and established companies. > http://p.sf.net/sfu/rsaconf-dev2dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > |
|
From: Hilmar L. <hl...@ne...> - 2010-01-25 23:19:30
|
On Jan 25, 2010, at 9:01 AM, William Piel wrote: > > Yeah, that's what I had in mind. A "manual" to PhyloWS using > TreeBASE API as the first implementation of it. That would indeed be a good example for a manual, but I think pretty strongly that PhyloWS needs to go into an evolutionary data interoperability story combining PhyloWS with NeXML and relevant ontologies (such as CDAO). -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
|
From: William P. <wil...@ya...> - 2010-01-25 14:01:33
|
On Jan 25, 2010, at 5:39 AM, Rutger Vos wrote: > On Mon, Jan 25, 2010 at 1:34 AM, William Piel <wil...@ya...> wrote: >> >> On Jan 24, 2010, at 3:04 PM, Hilmar Lapp wrote: >> >>> I suppose that would go into the Jan 2011 NAR database issue? I >>> believe they accept submissions year-round now, though that needs to >>> be double-checked >> >> Yeah, NAR is an option. There is a database issue in January and a webserver issue in july. About 2-4 pages per article. Another option is the application notes in Bioinformatics -- but also quite short (perhaps shorter). >> >> Maybe it makes sense to have one shorter "announcement" pub (in NAR or Bioinf, etc) and then separately something more focused and beefier elsewhere. e.g., Rutger, you could head-up an article on how to program with the API -- e.g., perhaps something similar to the well-used and oft-cited description of the NEXUS format that Swofford and the Maddison's published in Syst Bio. (for that kind of article, which is somewhat singular compared to the usual Sys Bio papers, we'd probably need a nod from the editor of Syst Bio ahead of time). > > Perhaps as a manuscript that also introduces PhyloWS by example? Yeah, that's what I had in mind. A "manual" to PhyloWS using TreeBASE API as the first implementation of it. bp |
|
From: Rutger V. <rut...@gm...> - 2010-01-25 10:39:52
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On Mon, Jan 25, 2010 at 1:34 AM, William Piel <wil...@ya...> wrote: > > On Jan 24, 2010, at 3:04 PM, Hilmar Lapp wrote: > >> I suppose that would go into the Jan 2011 NAR database issue? I >> believe they accept submissions year-round now, though that needs to >> be double-checked > > Yeah, NAR is an option. There is a database issue in January and a webserver issue in july. About 2-4 pages per article. Another option is the application notes in Bioinformatics -- but also quite short (perhaps shorter). > > Maybe it makes sense to have one shorter "announcement" pub (in NAR or Bioinf, etc) and then separately something more focused and beefier elsewhere. e.g., Rutger, you could head-up an article on how to program with the API -- e.g., perhaps something similar to the well-used and oft-cited description of the NEXUS format that Swofford and the Maddison's published in Syst Bio. (for that kind of article, which is somewhat singular compared to the usual Sys Bio papers, we'd probably need a nod from the editor of Syst Bio ahead of time). Perhaps as a manuscript that also introduces PhyloWS by example? -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
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From: William P. <wil...@ya...> - 2010-01-25 02:06:06
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On Jan 24, 2010, at 3:04 PM, Hilmar Lapp wrote: > I suppose that would go into the Jan 2011 NAR database issue? I > believe they accept submissions year-round now, though that needs to > be double-checked Yeah, NAR is an option. There is a database issue in January and a webserver issue in july. About 2-4 pages per article. Another option is the application notes in Bioinformatics -- but also quite short (perhaps shorter). Maybe it makes sense to have one shorter "announcement" pub (in NAR or Bioinf, etc) and then separately something more focused and beefier elsewhere. e.g., Rutger, you could head-up an article on how to program with the API -- e.g., perhaps something similar to the well-used and oft-cited description of the NEXUS format that Swofford and the Maddison's published in Syst Bio. (for that kind of article, which is somewhat singular compared to the usual Sys Bio papers, we'd probably need a nod from the editor of Syst Bio ahead of time). bp |
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From: Val T. <va...@ci...> - 2010-01-24 20:53:15
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I agree that we need something that can be used as a reference citation. Val On Jan 24, 2010, at 3:04 PM, Hilmar Lapp wrote: > I suppose that would go into the Jan 2011 NAR database issue? I > believe they accept submissions year-round now, though that needs to > be double-checked. Unless there are enough intellectual (beyond > informatics and implementation) novelties to make a more general case. > What did you have in mind? > > Although there are a variety of publications cited for and about > TreeBASE, as far as my recollection goes there doesn't seem to be one > that is easily accessible and comprehensive to the degree that it > would serve as the natural reference citation. So there could be an > opportunity here to change that for TB2. > > -hilmar > > On Jan 23, 2010, at 7:46 PM, Rutger Vos wrote: > >> Hi all, >> >> let's say we're near the point of being able to roll out the "mission >> accomplished" banner and launch TreeBASE2. Doesn't that mean there >> ought to be a publication (or application note) to mark that occasion? >> >> Rutger >> >> -- >> Dr. Rutger A. Vos >> School of Biological Sciences >> Philip Lyle Building, Level 4 >> University of Reading >> Reading >> RG6 6BX >> United Kingdom >> Tel: +44 (0) 118 378 7535 >> http://www.nexml.org >> http://rutgervos.blogspot.com >> >> ------------------------------------------------------------------------------ >> Throughout its 18-year history, RSA Conference consistently attracts >> the >> world's best and brightest in the field, creating opportunities for >> Conference >> attendees to learn about information security's most important >> issues through >> interactions with peers, luminaries and emerging and established >> companies. >> http://p.sf.net/sfu/rsaconf-dev2dev >> _______________________________________________ >> Treebase-devel mailing list >> Tre...@li... >> https://lists.sourceforge.net/lists/listinfo/treebase-devel > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : > =========================================================== > > > > > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts the > world's best and brightest in the field, creating opportunities for Conference > attendees to learn about information security's most important issues through > interactions with peers, luminaries and emerging and established companies. > http://p.sf.net/sfu/rsaconf-dev2dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel |
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From: Hilmar L. <hl...@ne...> - 2010-01-24 20:04:38
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I suppose that would go into the Jan 2011 NAR database issue? I believe they accept submissions year-round now, though that needs to be double-checked. Unless there are enough intellectual (beyond informatics and implementation) novelties to make a more general case. What did you have in mind? Although there are a variety of publications cited for and about TreeBASE, as far as my recollection goes there doesn't seem to be one that is easily accessible and comprehensive to the degree that it would serve as the natural reference citation. So there could be an opportunity here to change that for TB2. -hilmar On Jan 23, 2010, at 7:46 PM, Rutger Vos wrote: > Hi all, > > let's say we're near the point of being able to roll out the "mission > accomplished" banner and launch TreeBASE2. Doesn't that mean there > ought to be a publication (or application note) to mark that occasion? > > Rutger > > -- > Dr. Rutger A. Vos > School of Biological Sciences > Philip Lyle Building, Level 4 > University of Reading > Reading > RG6 6BX > United Kingdom > Tel: +44 (0) 118 378 7535 > http://www.nexml.org > http://rutgervos.blogspot.com > > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts > the > world's best and brightest in the field, creating opportunities for > Conference > attendees to learn about information security's most important > issues through > interactions with peers, luminaries and emerging and established > companies. > http://p.sf.net/sfu/rsaconf-dev2dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
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From: Rutger V. <rut...@gm...> - 2010-01-24 00:46:13
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Hi all, let's say we're near the point of being able to roll out the "mission accomplished" banner and launch TreeBASE2. Doesn't that mean there ought to be a publication (or application note) to mark that occasion? Rutger -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
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From: Vladimir G. <vga...@ne...> - 2010-01-23 04:10:00
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I hope you do not suggest that hibernate_sequence is the resource! -vg On Jan 22, 2010, at 6:37 PM, Hilmar Lapp wrote: > Hmm - could there be a deadlock situation brought about by the test > by having two transactions open on the same resource in two > connections? > > -hilmar > > On Jan 22, 2010, at 6:34 PM, Vladimir Gapeyev wrote: > >> As of late afternoon Fri Jan 22, all tables in treebase- >> dev.nescent.org/treebasedev draw their PK ids from >> hibernate_sequence, >> which was updated to start with 16000000000. >> >> Running 'mvn test' seemingly hangs forever on >> org.cipres.treebase.service.matrix.MatrixServiceImplTest. This might >> be due to an intrinsic problem with the test, or maybe because the >> test's transaction bumped into someone else's transaction? [I did >> manage to run this test successfully individually earlier in the day, >> but that time only 3 tables were switched to hibernate_sequence.] >> >> I see a couple that could be done to verify success: >> - Check that unit tests now execute correctly (Youjun?) >> - Check that data entry operations from UI work (Bill?) >> >> >> A few more remarks: >> >> - Repeating the sequence re-targeting procedure on another db >> instance will take me about an hour (there is manual work >> involved). It's not too bad, but still means we should perform it >> on all instances as soon as treebasedev is confirmed to function >> correctly. >> >> - The huge starting number for hibernate_sequence is probably due to >> tests. This suggests we should never run tests on the production >> instance. >> >> - All sequences but hibernate_sequence can now be dropped, I think. >> >> >> ------------------------------------------------------------------------------ >> Throughout its 18-year history, RSA Conference consistently >> attracts the >> world's best and brightest in the field, creating opportunities for >> Conference >> attendees to learn about information security's most important >> issues through >> interactions with peers, luminaries and emerging and established >> companies. >> http://p.sf.net/sfu/rsaconf-dev2dev >> _______________________________________________ >> Treebase-devel mailing list >> Tre...@li... >> https://lists.sourceforge.net/lists/listinfo/treebase-devel > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : > =========================================================== > > > |
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From: Hilmar L. <hl...@ne...> - 2010-01-22 23:38:01
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Hmm - could there be a deadlock situation brought about by the test by having two transactions open on the same resource in two connections? -hilmar On Jan 22, 2010, at 6:34 PM, Vladimir Gapeyev wrote: > As of late afternoon Fri Jan 22, all tables in treebase- > dev.nescent.org/treebasedev draw their PK ids from hibernate_sequence, > which was updated to start with 16000000000. > > Running 'mvn test' seemingly hangs forever on > org.cipres.treebase.service.matrix.MatrixServiceImplTest. This might > be due to an intrinsic problem with the test, or maybe because the > test's transaction bumped into someone else's transaction? [I did > manage to run this test successfully individually earlier in the day, > but that time only 3 tables were switched to hibernate_sequence.] > > I see a couple that could be done to verify success: > - Check that unit tests now execute correctly (Youjun?) > - Check that data entry operations from UI work (Bill?) > > > A few more remarks: > > - Repeating the sequence re-targeting procedure on another db > instance will take me about an hour (there is manual work > involved). It's not too bad, but still means we should perform it > on all instances as soon as treebasedev is confirmed to function > correctly. > > - The huge starting number for hibernate_sequence is probably due to > tests. This suggests we should never run tests on the production > instance. > > - All sequences but hibernate_sequence can now be dropped, I think. > > > ------------------------------------------------------------------------------ > Throughout its 18-year history, RSA Conference consistently attracts > the > world's best and brightest in the field, creating opportunities for > Conference > attendees to learn about information security's most important > issues through > interactions with peers, luminaries and emerging and established > companies. > http://p.sf.net/sfu/rsaconf-dev2dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
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From: Vladimir G. <vga...@ne...> - 2010-01-22 23:34:26
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As of late afternoon Fri Jan 22, all tables in treebase- dev.nescent.org/treebasedev draw their PK ids from hibernate_sequence, which was updated to start with 16000000000. Running 'mvn test' seemingly hangs forever on org.cipres.treebase.service.matrix.MatrixServiceImplTest. This might be due to an intrinsic problem with the test, or maybe because the test's transaction bumped into someone else's transaction? [I did manage to run this test successfully individually earlier in the day, but that time only 3 tables were switched to hibernate_sequence.] I see a couple that could be done to verify success: - Check that unit tests now execute correctly (Youjun?) - Check that data entry operations from UI work (Bill?) A few more remarks: - Repeating the sequence re-targeting procedure on another db instance will take me about an hour (there is manual work involved). It's not too bad, but still means we should perform it on all instances as soon as treebasedev is confirmed to function correctly. - The huge starting number for hibernate_sequence is probably due to tests. This suggests we should never run tests on the production instance. - All sequences but hibernate_sequence can now be dropped, I think. |
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