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From: William P. <wil...@ya...> - 2010-04-08 18:36:02
|
On Apr 8, 2010, at 2:32 PM, Vladimir Gapeyev wrote: > Bill, the url is http://treebase-dev.nescent.org/treebase-web oh, whoops. sorry about that. bp |
|
From: Vladimir G. <vla...@du...> - 2010-04-08 18:32:09
|
Bill, the url is http://treebase-dev.nescent.org/treebase-web -- it has been up. --VG On Apr 8, 2010, at 1:56 PM, William Piel wrote: > Hi Jon, > > Can we treebase-dev up and running? > > http://treebasedb-dev.nescent.org/treebase-web/home.html > > I'm trying to test a bug-fix that Youjun just made, but first I have > to upload data to the dev database, and I can't do it without the > dev build at NESCent (because Youjun's build does not have Mesquite). > > bp > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel |
|
From: William P. <wil...@ya...> - 2010-04-08 17:56:20
|
Hi Jon, Can we treebase-dev up and running? http://treebasedb-dev.nescent.org/treebase-web/home.html I'm trying to test a bug-fix that Youjun just made, but first I have to upload data to the dev database, and I can't do it without the dev build at NESCent (because Youjun's build does not have Mesquite). bp |
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From: Jon A. <jon...@ne...> - 2010-04-07 22:02:25
|
Yes, I'm fairly certain it is. I've not run the application for a full week without it crashing. Yes, 3 AM is a relatively low time in activity. I'll restart it then and see how it goes. 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 Hours Pages Hits Bandwidth 00 1912 7648 94.36 MB 01 1931 5751 68.41 MB 02 1677 4950 60.87 MB 03 1454 4984 58.54 MB 04 2039 9859 102.12 MB 05 2288 10542 101.41 MB 06 2226 10524 104.61 MB 07 2849 15566 153.98 MB 08 2661 13736 146.83 MB 09 3205 15001 176.80 MB 10 3400 16562 208.83 MB 11 2757 14737 199.35 MB Hours Pages Hits Bandwidth 12 2834 15378 166.41 MB 13 3631 20301 190.78 MB 14 4044 21818 191.62 MB 15 4311 27330 217.16 MB 16 3406 18848 145.95 MB 17 2859 13510 149.14 MB 18 2430 11675 120.49 MB 19 1904 7659 91.29 MB 20 1840 7308 83.85 MB 21 2991 12158 113.13 MB 22 3105 16002 138.05 MB 23 2142 9379 82.46 MB -Jon On Apr 7, 2010, at 3:39 PM, William Piel wrote: > > On Apr 7, 2010, at 12:48 PM, Jon Auman wrote: > >> Hi Bill, >> >> Sorry, I did get a page, but I was away from my computer. >> >> The application crashes at least once a week, sometimes more often. I've been thinking that maybe we should restart tomcat every night? If you like this idea, any preference in time? >> >> Thanks, >> Jon > > Do you think this a memory leak issue? > > I guess 3AM is probably the best time for US users. (maybe we should consult our stats?) > > bp > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel ------------------------------------------------------- Jon Auman Systems Administrator National Evolutionary Synthesis Center Duke University http:www.nescent.org jon...@ne... ------------------------------------------------------ |
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From: William P. <wil...@ya...> - 2010-04-07 19:40:11
|
On Apr 7, 2010, at 12:48 PM, Jon Auman wrote: > Hi Bill, > > Sorry, I did get a page, but I was away from my computer. > > The application crashes at least once a week, sometimes more often. I've been thinking that maybe we should restart tomcat every night? If you like this idea, any preference in time? > > Thanks, > Jon Do you think this a memory leak issue? I guess 3AM is probably the best time for US users. (maybe we should consult our stats?) bp |
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From: Jon A. <jon...@ne...> - 2010-04-07 16:48:32
|
Hi Bill, Sorry, I did get a page, but I was away from my computer. The application crashes at least once a week, sometimes more often. I've been thinking that maybe we should restart tomcat every night? If you like this idea, any preference in time? Thanks, Jon On Apr 7, 2010, at 12:33 PM, William Piel wrote: > > Any ideas when this will be up again? (now it's 12:34 PM) > > bp > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel ------------------------------------------------------- Jon Auman Systems Administrator National Evolutionary Synthesis Center Duke University http:www.nescent.org jon...@ne... ------------------------------------------------------ |
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From: William P. <wil...@ya...> - 2010-04-07 16:42:36
|
Any ideas when this will be up again? (now it's 12:34 PM) bp |
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From: youjun g. <you...@ya...> - 2010-04-02 21:47:04
|
Jon and Vladimir, Thank you very much! Youjun On Fri, Apr 2, 2010 at 5:31 PM, Jon Auman <jon...@du...> wrote: > I've updated dev and production to the latest war file. > -Jon > > On Apr 2, 2010, at 4:02 PM, Vladimir Gapeyev wrote: > > > On Apr 2, 2010, at 3:13 PM, youjun guo wrote: > > > I just did a new submission to modify the script, since today is yale > holiday I don't have the access to my personal server until next Mon., Can > you try it on your testing server see if the phylowidget link works? > > > Thanks, the URL it generates now is > > http://www.phylowidget.org/full/?tree='http://localhost:8080/treebase-web/tree_for_phylowidget/TB2:Tr4207'<http://www.phylowidget.org/full/?tree=%27http://localhost:8080/treebase-web/tree_for_phylowidget/TB2:Tr4207%27> > which looks ok. > > More surprisingly, it works with 'localhost' in it! How does > phylowidget.org know to go to my server rather than to its own > localhost??? > > Regardless, I am asking Jon to re-deploy both on dev and prod. Don't > expect quick response, though - he is taking a day off today. > > --VG > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > > http://p.sf.net/sfu/intel-sw-dev_______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > > ------------------------------------------------------- > Jon Auman > Systems Administrator > National Evolutionary Synthesis Center > Duke University > http:www.nescent.org > jon...@ne... > ------------------------------------------------------ > > > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > |
|
From: Hilmar L. <hl...@ne...> - 2010-04-02 21:38:57
|
On Apr 2, 2010, at 4:02 PM, Vladimir Gapeyev wrote: > More surprisingly, it works with 'localhost' in it! How does > phylowidget.org know to go to my server rather than to its own > localhost??? > It's an applet running in your browser, so wherever that browser is is locahost. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
|
From: Jon A. <jon...@du...> - 2010-04-02 21:31:35
|
I've updated dev and production to the latest war file. -Jon On Apr 2, 2010, at 4:02 PM, Vladimir Gapeyev wrote: > > On Apr 2, 2010, at 3:13 PM, youjun guo wrote: >> >> I just did a new submission to modify the script, since today is yale holiday I don't have the access to my personal server until next Mon., Can you try it on your testing server see if the phylowidget link works? > > Thanks, the URL it generates now is > http://www.phylowidget.org/full/?tree='http://localhost:8080/treebase-web/tree_for_phylowidget/TB2:Tr4207' > which looks ok. > > More surprisingly, it works with 'localhost' in it! How does phylowidget.org know to go to my server rather than to its own localhost??? > > Regardless, I am asking Jon to re-deploy both on dev and prod. Don't expect quick response, though - he is taking a day off today. > > --VG > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev_______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel ------------------------------------------------------- Jon Auman Systems Administrator National Evolutionary Synthesis Center Duke University http:www.nescent.org jon...@ne... ------------------------------------------------------ |
|
From: Vladimir G. <vla...@du...> - 2010-04-02 20:02:57
|
On Apr 2, 2010, at 3:13 PM, youjun guo wrote: > > I just did a new submission to modify the script, since today is > yale holiday I don't have the access to my personal server until > next Mon., Can you try it on your testing server see if the > phylowidget link works? Thanks, the URL it generates now is http://www.phylowidget.org/full/?tree='http://localhost:8080/treebase-web/tree_for_phylowidget/TB2:Tr4207' which looks ok. More surprisingly, it works with 'localhost' in it! How does phylowidget.org know to go to my server rather than to its own localhost??? Regardless, I am asking Jon to re-deploy both on dev and prod. Don't expect quick response, though - he is taking a day off today. --VG |
|
From: youjun g. <you...@ya...> - 2010-04-02 19:13:13
|
Vladimir, I just did a new submission to modify the script, since today is yale holiday I don't have the access to my personal server until next Mon., Can you try it on your testing server see if the phylowidget link works? It looks to me the current version of treebase.org is 664 or earlier. Thanks Youjun On Fri, Apr 2, 2010 at 2:19 PM, Vladimir Gapeyev <vla...@du...>wrote: > > On Apr 2, 2010, at 11:04 AM, William Piel wrote: > > > On Apr 2, 2010, at 9:49 AM, Vladimir Gapeyev wrote: > > I have asked Jon to redeploy with a build for svn#667 to treebase-dev > --- looking at what URL it generates for Phylowidget on mu local > server, I doubt it would work: > http://www.phylowidget.org/full/?tree='http://localhost:8080TB2:Tr31'<http://www.phylowidget.org/full/?tree=%27http://localhost:8080TB2:Tr31%27> > > > Do you not have this javascript ? > > <script type="text/javascript"> > function openPhylowidget(tree_id) > { > var realURL = "http://www.phylowidget.org/full/?tree='http://<http://www.phylowidget.org/full/?tree=%27http://> > "+location.host+"/treebase-web/tree_for_phylowidget/"+"TB2:Tr"+tree_id+"'"; > window.open(realURL,'myplwidget') > } > </script> > > (As in here<http://130.132.27.212:8080/treebase-web/search/treeSearch.html> > ) > > Or you do have that, but it still creates a "localhost" link? > > > The "localhost" part is ok, since that's where I run the app from. I meant > there were missing slashes or even URL fragments. Jon has now deployed #667 > to treebase-dev, and this is how it looks there: > > http://www.phylowidget.org/full/?tree='http://treebase-dev.nescent.orgTB2:Tr4207'<http://www.phylowidget.org/full/?tree=%27http://treebase-dev.nescent.orgTB2:Tr4207%27> > > Most likely, Youjun did not yet commit the most recent version of the > JavaScript. > > As for the versions that I mention, they are the ones SVN reports when I > update. You can compare them to the ones in the commit emails. > > --VG > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > |
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From: youjun g. <you...@ya...> - 2010-04-02 18:49:02
|
That javascript exist since 665. Bill fixed a open bracket on 666, and I
moved the script out of a loop structure (a table tag) to avoid repeat on
667, this cause ${url}
lost the correct value.
I will do a new submission.
Youjun
On Fri, Apr 2, 2010 at 2:19 PM, Vladimir Gapeyev
<vla...@du...>wrote:
>
> On Apr 2, 2010, at 11:04 AM, William Piel wrote:
>
>
> On Apr 2, 2010, at 9:49 AM, Vladimir Gapeyev wrote:
>
> I have asked Jon to redeploy with a build for svn#667 to treebase-dev
> --- looking at what URL it generates for Phylowidget on mu local
> server, I doubt it would work:
> http://www.phylowidget.org/full/?tree='http://localhost:8080TB2:Tr31'<http://www.phylowidget.org/full/?tree=%27http://localhost:8080TB2:Tr31%27>
>
>
> Do you not have this javascript ?
>
> <script type="text/javascript">
> function openPhylowidget(tree_id)
> {
> var realURL = "http://www.phylowidget.org/full/?tree='http://<http://www.phylowidget.org/full/?tree=%27http://>
> "+location.host+"/treebase-web/tree_for_phylowidget/"+"TB2:Tr"+tree_id+"'";
> window.open(realURL,'myplwidget')
> }
> </script>
>
> (As in here<http://130.132.27.212:8080/treebase-web/search/treeSearch.html>
> )
>
> Or you do have that, but it still creates a "localhost" link?
>
>
> The "localhost" part is ok, since that's where I run the app from. I meant
> there were missing slashes or even URL fragments. Jon has now deployed #667
> to treebase-dev, and this is how it looks there:
>
> http://www.phylowidget.org/full/?tree='http://treebase-dev.nescent.orgTB2:Tr4207'<http://www.phylowidget.org/full/?tree=%27http://treebase-dev.nescent.orgTB2:Tr4207%27>
>
> Most likely, Youjun did not yet commit the most recent version of the
> JavaScript.
>
> As for the versions that I mention, they are the ones SVN reports when I
> update. You can compare them to the ones in the commit emails.
>
> --VG
>
>
>
> ------------------------------------------------------------------------------
> Download Intel® Parallel Studio Eval
> Try the new software tools for yourself. Speed compiling, find bugs
> proactively, and fine-tune applications for parallel performance.
> See why Intel Parallel Studio got high marks during beta.
> http://p.sf.net/sfu/intel-sw-dev
> _______________________________________________
> Treebase-devel mailing list
> Tre...@li...
> https://lists.sourceforge.net/lists/listinfo/treebase-devel
>
>
|
|
From: Vladimir G. <vla...@du...> - 2010-04-02 18:19:13
|
On Apr 2, 2010, at 11:04 AM, William Piel wrote: > > On Apr 2, 2010, at 9:49 AM, Vladimir Gapeyev wrote: > >> I have asked Jon to redeploy with a build for svn#667 to treebase-dev >> --- looking at what URL it generates for Phylowidget on mu local >> server, I doubt it would work: >> http://www.phylowidget.org/full/?tree='http://localhost:8080TB2:Tr31' >> > > Do you not have this javascript ? > > <script type="text/javascript"> > function openPhylowidget(tree_id) > { > var realURL = "http://www.phylowidget.org/full/? > tree='http://"+location.host+"/treebase-web/ > tree_for_phylowidget/"+"TB2:Tr"+tree_id+"'"; > window.open(realURL,'myplwidget') > } > </script> > > (As in here) > > Or you do have that, but it still creates a "localhost" link? The "localhost" part is ok, since that's where I run the app from. I meant there were missing slashes or even URL fragments. Jon has now deployed #667 to treebase-dev, and this is how it looks there: http://www.phylowidget.org/full/?tree='http://treebase-dev.nescent.orgTB2:Tr4207' Most likely, Youjun did not yet commit the most recent version of the JavaScript. As for the versions that I mention, they are the ones SVN reports when I update. You can compare them to the ones in the commit emails. --VG |
|
From: Rutger V. <rut...@gm...> - 2010-04-02 16:09:25
|
That number is no longer being incremented because it requires a step in the deployment process that was implemented in the publish script, but no longer in the current procedure, I don't think. On Friday, April 2, 2010, youjun guo <you...@ya...> wrote: > Based on Rutger's discription: > > If you look in the html source of any page and you scroll all the way > down to 'p class="footerLogo"' it will show the SVN revision of that > deployment. > the current version number on treebase.org is 245. > > Youjun > > On Fri, Apr 2, 2010 at 11:04 AM, William Piel <wil...@ya...> wrote: > > On Apr 2, 2010, at 9:49 AM, Vladimir Gapeyev wrote: > > I have asked Jon to redeploy with a build for svn#667 to treebase-dev > --- looking at what URL it generates for Phylowidget on mu local > server, I doubt it would work: > http://www.phylowidget.org/full/?tree='http://localhost:8080TB2:Tr31' > > > Do you not have this javascript ? > <script type="text/javascript"> function openPhylowidget(tree_id) > { var realURL = "http://www.phylowidget.org/full/?tree='http://"+location.host+"/treebase-web/tree_for_phylowidget/"+"TB2:Tr"+tree_id+"'"; > window.open(realURL,'myplwidget') }</script> > > (As in here <http://130.132.27.212:8080/treebase-web/search/treeSearch.html>) > > Or you do have that, but it still creates a "localhost" link? > bp > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > > -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
|
From: William P. <wil...@ya...> - 2010-04-02 15:30:12
|
On Apr 2, 2010, at 10:15 AM, youjun guo wrote: > the current version number on treebase.org is 245. Yeah, I just don't know exactly what version Vladimir has on his laptop: On Apr 2, 2010, at 9:49 AM, Vladimir Gapeyev wrote: > looking at what URL it generates for Phylowidget on my local > server, I doubt it would work: |
|
From: youjun g. <you...@ya...> - 2010-04-02 15:15:40
|
Based on Rutger's discription: If you look in the html source of any page and you scroll all the way > down to 'p class="footerLogo"' it will show the SVN revision of that > deployment. the current version number on treebase.org is 245. Youjun On Fri, Apr 2, 2010 at 11:04 AM, William Piel <wil...@ya...> wrote: > > On Apr 2, 2010, at 9:49 AM, Vladimir Gapeyev wrote: > > I have asked Jon to redeploy with a build for svn#667 to treebase-dev > --- looking at what URL it generates for Phylowidget on mu local > server, I doubt it would work: > http://www.phylowidget.org/full/?tree='http://localhost:8080TB2:Tr31'<http://www.phylowidget.org/full/?tree=%27http://localhost:8080TB2:Tr31%27> > > > Do you not have this javascript ? > > <script type="text/javascript"> > function openPhylowidget(tree_id) > { > var realURL = "http://www.phylowidget.org/full/?tree='http://<http://www.phylowidget.org/full/?tree=%27http://> > "+location.host+"/treebase-web/tree_for_phylowidget/"+"TB2:Tr"+tree_id+"'"; > window.open(realURL,'myplwidget') > } > </script> > > (As in here<http://130.132.27.212:8080/treebase-web/search/treeSearch.html> > ) > > Or you do have that, but it still creates a "localhost" link? > > bp > > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > |
|
From: William P. <wil...@ya...> - 2010-04-02 15:04:50
|
On Apr 2, 2010, at 9:49 AM, Vladimir Gapeyev wrote: > I have asked Jon to redeploy with a build for svn#667 to treebase-dev > --- looking at what URL it generates for Phylowidget on mu local > server, I doubt it would work: > http://www.phylowidget.org/full/?tree='http://localhost:8080TB2:Tr31' > Do you not have this javascript ? <script type="text/javascript"> function openPhylowidget(tree_id) { var realURL = "http://www.phylowidget.org/full/?tree='http://"+location.host+"/treebase-web/tree_for_phylowidget/"+"TB2:Tr"+tree_id+"'"; window.open(realURL,'myplwidget') } </script> (As in here) Or you do have that, but it still creates a "localhost" link? bp |
|
From: Vladimir G. <vla...@du...> - 2010-04-02 14:49:39
|
On Apr 2, 2010, at 9:03 AM, William Piel wrote: > > Let's rebuild to reflect the latest fixes regarding phylowidget. I have asked Jon to redeploy with a build for svn#667 to treebase-dev --- looking at what URL it generates for Phylowidget on mu local server, I doubt it would work: http://www.phylowidget.org/full/?tree='http://localhost:8080TB2:Tr31' > Also, I need the dev rebuilt because there is a serious bug in > either the delete trees or delete matrices features that seems to > corrupt the system -- to figure out exactly what's going on, I need > to be able to test against dev. I think yesterday's redeploy includes the matrix delete fix. --Vg |
|
From: Vladimir G. <vga...@ne...> - 2010-04-02 14:44:05
|
On Apr 1, 2010, at 5:19 PM, Hilmar Lapp wrote: > > On Apr 1, 2010, at 4:54 PM, Vladimir Gapeyev wrote: > >> My task for the next week is to set up automatic build & deployment >> on >> treebase-dev, triggered by SVN commits. > > Vladimir - you don't mean rebuild after every single commit to > treebase svn, right? That's exactly what I mean. > There is no guarantee right now in our workflow that a single commit > leaves the application in a buildable state, so we shouldn't assume > otherwise. Just to clarify, we are talking about the development server. We do strive to commit only buildable code, don't we? An occasional mishap, though regretful, isn't a tragedy, is it? > At NESCent we are using a dedicated repo for committing WARs. If > this isn't what you were planning, let's talk about it first with > Jon before you do anything in this direction. Sure, we can talk about this when Jon is back on Monday. Jon was supportive of this idea, though. --VG |
|
From: Vladimir G. <vga...@ne...> - 2010-04-02 14:35:44
|
On Apr 1, 2010, at 5:13 PM, Hilmar Lapp wrote: >> >> Finally, I have changed several JSP pages that had "http://purl.org/phylo/treebase/phylows >> ...." urls hardwired so that they instead look up the tb2/PurlBase >> parameter. However, I used <%= ... %>, so someone more >> knowledgeable might want to adjust that syntax. > > The value of these parameters is application-wide, right? So, > wouldn't the easiest way be to have a class that sets these as > application context parameters from JNDI and gets executed when the > application is loaded? Or is this the way you implemented it? I just changed the implementation of an existing function (now called getPurlBase) in TreebaseUtil class to look up in JNDI instead of treebase.properties. The new function getSiteUrl just follows the same pattern. --VG |
|
From: William P. <wil...@ya...> - 2010-04-02 13:03:33
|
Let's rebuild to reflect the latest fixes regarding phylowidget. Also, I need the dev rebuilt because there is a serious bug in either the delete trees or delete matrices features that seems to corrupt the system -- to figure out exactly what's going on, I need to be able to test against dev. bp |
|
From: Hilmar L. <hl...@ne...> - 2010-04-01 21:24:34
|
On Apr 1, 2010, at 5:18 PM, William Piel wrote:
> Thanks Youjun,
>
> the javascript doesn't seem to be responding here:
>
> http://130.132.27.212:8080/treebase-web/search/study/trees.html?id=264
There is a closing parenthesis missing in the openPhylowidget call:
> <a href="javascript:void(0)" onClick="openPhylowidget(${tree.id}">
so the JavaScript has a syntax error.
What I don't understand is why the script snippet needs to be repeated
multiple times on the page?
-hilmar
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: Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org :
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From: William P. <wil...@ya...> - 2010-04-01 21:24:08
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On Apr 1, 2010, at 4:15 PM, Hilmar Lapp wrote: > doesn't this also mean that we are not using a locally modified version of PhyloWidget anymore? We are for the data submission side -- that one is modified to allow saving back to the database. And so far that one is incompatible with FireFox-for-Mac. For the browse side, we use the latest version of PhyloWidget (whatever it is) on phylowidget.org. That one works on FireFox-for-Mac. I don't mind keeping a copy of the latest version of PhyloWidget on http://www.treebase.org behind Apache, so that we're not dependent on the proper functioning of phylowidget.org website. Perhaps Jon can set it up there, and when it's working we'll just change the URL. bp |
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From: Hilmar L. <hl...@ne...> - 2010-04-01 21:19:25
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On Apr 1, 2010, at 4:54 PM, Vladimir Gapeyev wrote: > My task for the next week is to set up automatic build & deployment on > treebase-dev, triggered by SVN commits. Vladimir - you don't mean rebuild after every single commit to treebase svn, right? There is no guarantee right now in our workflow that a single commit leaves the application in a buildable state, so we shouldn't assume otherwise. At NESCent we are using a dedicated repo for committing WARs. If this isn't what you were planning, let's talk about it first with Jon before you do anything in this direction. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
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