From: Mark H. <mth...@gm...> - 2014-01-02 20:15:46
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Hi, The example is the ID Tl241048 in http://treebase.org/treebase-web/search/downloadAStudy.html?id=10000&format=nexml The nexus output has multiple taxa blocks and the taxon name Cardamine_alpina_DAE2_R325 (which is associated with the offending otu elements in the nexml form) occurs in multiple taxa blocks. In the (mesquitized) form of NEXUS that allows multiple TAXA blocks, the block TITLE acts like a namespace. So identical taxa labels are not a problem in NEXUS. But in nexml spec ids are supposed to be unique throughout the file. I suspect this difference in approaches to dealing with disambiguation may be the source of the bug. all the best, Mark -- Mark Holder mth...@gm... mth...@ku... http://phylo.bio.ku.edu/mark-holder ============================================== Department of Ecology and Evolutionary Biology University of Kansas 6031 Haworth Hall 1200 Sunnyside Avenue Lawrence, Kansas 66045 lab phone: 785.864.5789 fax (shared): 785.864.5860 ============================================== |