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[Treebase-guts] SF.net SVN: treebase:[1100] trunk
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From: <hs...@us...> - 2013-06-04 17:44:51
|
Revision: 1100
http://sourceforge.net/p/treebase/code/1100
Author: hshyket
Date: 2013-06-04 17:44:39 +0000 (Tue, 04 Jun 2013)
Log Message:
-----------
Adding classification search functionality. Adding NCBI tables. Updating POM files to point to new JBoss repository.
Modified Paths:
--------------
trunk/pom.xml
trunk/treebase-core/pom.xml
trunk/treebase-core/src/main/java/org/cipres/treebase/dao/tree/PhyloTreeDAO.java
trunk/treebase-core/src/main/java/org/cipres/treebase/domain/tree/PhyloTreeHome.java
trunk/treebase-core/src/main/java/org/cipres/treebase/domain/tree/PhyloTreeService.java
trunk/treebase-core/src/main/java/org/cipres/treebase/service/tree/PhyloTreeServiceImpl.java
trunk/treebase-web/pom.xml
trunk/treebase-web/src/main/webapp/WEB-INF/treebase-servlet.xml
Added Paths:
-----------
trunk/treebase-core/db/cleaning/2013-06-04_add_ncbi_tables/
trunk/treebase-core/db/cleaning/2013-06-04_add_ncbi_tables/ncbi_nodes.sql
trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/ClassificationSearchController.java
trunk/treebase-web/src/main/java/org/cipres/treebase/web/controllers/PhyloWSClassificationController.java
trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/classificationSearch.jsp
Modified: trunk/pom.xml
===================================================================
--- trunk/pom.xml 2013-02-22 22:37:40 UTC (rev 1099)
+++ trunk/pom.xml 2013-06-04 17:44:39 UTC (rev 1100)
@@ -184,7 +184,7 @@
<repository>
<id>repository.jboss.org</id>
<name>JBoss Maven Repository</name>
- <url>http://repository.jboss.org/maven2</url>
+ <url>https://repository.jboss.org/nexus/content/groups/public/maven2</url>
<layout>default</layout>
</repository>
Added: trunk/treebase-core/db/cleaning/2013-06-04_add_ncbi_tables/ncbi_nodes.sql
===================================================================
--- trunk/treebase-core/db/cleaning/2013-06-04_add_ncbi_tables/ncbi_nodes.sql (rev 0)
+++ trunk/treebase-core/db/cleaning/2013-06-04_add_ncbi_tables/ncbi_nodes.sql 2013-06-04 17:44:39 UTC (rev 1100)
@@ -0,0 +1,1496333 @@
+--
+-- PostgreSQL database dump
+--
+
+-- Dumped from database version 9.1.3
+-- Dumped by pg_dump version 9.1.3
+-- Started on 2013-05-31 13:56:07
+
+SET statement_timeout = 0;
+SET client_encoding = 'UTF8';
+SET standard_conforming_strings = on;
+SET check_function_bodies = false;
+SET client_min_messages = warning;
+
+SET search_path = public, pg_catalog;
+
+SET default_tablespace = '';
+
+SET default_with_oids = false;
+
+--
+-- TOC entry 161 (class 1259 OID 83891)
+-- Dependencies: 5
+-- Name: ncbi_names; Type: TABLE; Schema: public; Owner: piel; Tablespace:
+--
+
+CREATE TABLE ncbi_names (
+ tax_id integer NOT NULL,
+ name_txt character varying(255) NOT NULL,
+ unique_name character varying(255),
+ name_class character varying(32)
+);
+
+
+ALTER TABLE public.ncbi_names OWNER TO piel;
+
+--
+-- TOC entry 1877 (class 0 OID 83891)
+-- Dependencies: 161
+-- Data for Name: ncbi_names; Type: TABLE DATA; Schema: public; Owner: piel
+--
+
+COPY ncbi_names (tax_id, name_txt, unique_name, name_class) FROM stdin;
+1 all \N synonym
+1 root \N scientific name
+2 Bacteria Bacteria <prokaryote> scientific name
+2 Monera Monera <Bacteria> in-part
+2 Procaryotae Procaryotae <Bacteria> in-part
+2 Prokaryota Prokaryota <Bacteria> in-part
+2 Prokaryotae Prokaryotae <Bacteria> in-part
+2 bacteria bacteria <blast2> blast name
+2 eubacteria \N genbank common name
+2 not Bacteria Haeckel 1894 \N synonym
+2 prokaryote prokaryote <Bacteria> in-part
+2 prokaryotes prokaryotes <Bacteria> in-part
+6 Azorhizobium \N scientific name
+6 Azorhizobium Dreyfus et al. 1988 \N synonym
+6 Azotirhizobium \N equivalent name
+7 ATCC 43989 \N type material
+7 Azorhizobium caulinodans \N scientific name
+7 Azorhizobium caulinodans Dreyfus et al. 1988 \N synonym
+7 Azotirhizobium caulinodans \N equivalent name
+7 CCUG 26647 \N type material
+7 DSM 5975 \N type material
+7 IFO 14845 \N type material
+7 JCM 20966 \N type material
+7 LMG 6465 \N type material
+7 NBRC 14845 \N type material
+7 ORS 571 \N type material
+9 Acyrthosiphon pisum symbiont P \N includes
+9 Buchnera aphidicola \N scientific name
+9 Buchnera aphidicola Munson et al. 1991 \N synonym
+10 "Cellvibrio" Winogradsky 1929 \N synonym
+10 Cellvibrio \N scientific name
+10 Cellvibrio (ex Winogradsky 1929) Blackall et al. 1986 emend. Humphry et al. 2003 \N synonym
+11 "Cellvibrio gilvus" Hulcher and King 1958 \N authority
+11 Cellvibrio gilvus \N equivalent name
+11 [Cellvibrio] gilvus \N scientific name
+13 Dictyoglomus \N scientific name
+13 Dictyoglomus Saiki et al. 1985 \N authority
+14 ATCC 35947 \N type material
+14 DSM 3960 \N type material
+14 Dictyoglomus thermophilum \N scientific name
+14 Dictyoglomus thermophilum Saiki et al. 1985 \N authority
+14 strain H-6-12 \N type material
+16 Methyliphilus \N equivalent name
+16 Methylophilus \N scientific name
+16 Methylophilus Jenkins et al. 1987 \N synonym
+16 Methylotrophus \N misspelling
+17 ATCC 53528 \N type material
+17 DSM 46235 \N type material
+17 LMG 6787 \N type material
+17 Methyliphilus methylitrophus \N equivalent name
+17 Methyliphilus methylotrophus \N equivalent name
+17 Methylophilus methylitrophus \N equivalent name
+17 Methylophilus methylotrophus \N scientific name
+17 Methylophilus methylotrophus Jenkins et al. 1987 \N authority
+17 Methylophilus sp. CBMB147 \N includes
+17 Methylotrophus methylophilus \N synonym
+17 NCIB 10515 \N type material
+17 NCIMB 10515 \N type material
+17 VKM B-1623 \N type material
+18 Pelobacter \N scientific name
+18 Pelobacter Schink and Pfennig 1983 \N authority
+19 DSM 2380 \N type material
+19 NBRC 103641 \N type material
+19 Pelobacter carbinolicus \N scientific name
+19 Pelobacter carbinolicus Schink 1984 \N authority
+19 strain Gra Bd 1 \N type material
+20 Phenylobacterium \N scientific name
+20 Phenylobacterium Lingens et al. 1985 emend. Abraham et al. 2008 \N authority
+20 Phenylobacterium Lingens et al. 1985 emend. Kanso and Patel 2004 \N authority
+20 Phenylobacterium Lingens et al. 1985 emend. Oh and Roh 2012 \N authority
+20 Phenylobacterium Lingens et al. 1985 emend. Tiago et al. 2005 \N authority
+21 ATCC 35973 \N type material
+21 CIP 103305 \N type material
+21 DSM 1986 \N type material
+21 LMG 6165 \N type material
+21 Phenylobacterium immobile \N scientific name
+21 Phenylobacterium immobile Lingens et al. 1985 \N authority
+22 Shewanella \N scientific name
+22 Shewanella MacDonell and Colwell 1986 \N synonym
+23 ATCC 39565 \N type material
+23 Alteromonas colwelliana \N synonym
+23 Alteromonas colwelliana Weiner et al. 1988 \N authority
+23 Shewanella affinis \N synonym
+23 Shewanella affinis Ivanova et al. 2004 \N authority
+23 Shewanella colwelliana \N scientific name
+23 Shewanella colwelliana (Weiner et al. 1988) Coyne et al. 1990 \N authority
+23 strain LST-W \N type material
+24 "Pseudomonas putrefaciens" (Derby and Hammer) Long and Hammer 1941 \N authority
+24 ATCC 8071 \N type material
+24 Alteromonas putrefaciens \N synonym
+24 Alteromonas putrefaciens (ex Derby and Hammer) Lee et al. 1981 \N authority
+24 Alteromonas putrifaciens \N misspelling
+24 CCUG 13452 D \N type material
+24 CFBP 3033 \N type material
+24 CFBP 3034 \N type material
+24 CIP 80.40 \N type material
+24 DSM 6067 \N type material
+24 IFO 3908 \N type material
+24 JCM 20190 \N type material
+24 JCM 9294 \N type material
+24 LMG 2268 \N type material
+24 NBRC 3908 \N type material
+24 NCIB 10471 \N type material
+24 NCIMB 10471 \N type material
+24 NCTC 12960 \N type material
+24 Pseudomonas putrefaciens \N synonym
+24 Shewanella putrefaciens \N scientific name
+24 Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986 \N authority
+24 Shewanella putrifaciens \N misspelling
+24 strain Hammer 95 \N type material
+25 ATCC 33224 \N type material
+25 Alteromonas hanedai \N synonym
+25 Alteromonas hanedai Jensen et al. 1981 \N synonym
+25 CCUG 16097 \N type material
+25 CIP 103207 \N type material
+25 DSM 6066 \N type material
+25 JCM 20706 \N type material
+25 LMG 19004 \N type material
+25 NBRC 102223 \N type material
+25 Shewanella hanedai \N scientific name
+25 Shewanella hanedai (Jensen et al. 1981) MacDonell and Colwell 1986 \N synonym
+25 strain 281 \N type material
+27 halophilic eubacterium (NRCC 41227) \N synonym
+27 halophilic eubacterium NRCC 41227 \N scientific name
+27 halophilic eubacterium NRCC41227 \N synonym
+28 halophilic eubacterium \N scientific name
+29 Myxobacteria \N synonym
+29 Myxococcales \N scientific name
+29 Myxococcales Tchan et al. 1948 \N authority
+29 The Myxobacteria \N synonym
+29 fruiting gliding bacteria \N genbank common name
+31 Myxococcaceae \N scientific name
+31 Myxococcaceae Jahn 1924 \N synonym
+32 Myxococcus \N scientific name
+32 Myxococcus Thaxter 1892 \N synonym
+33 "Micrococcus fulvus" Cohn 1875 \N authority
+33 ATCC 25199 \N type material
+33 Micrococcus fulvus \N synonym
+33 Myxococcus fulvus \N scientific name
+33 Myxococcus fulvus (Cohn 1875) Jahn 1911 \N authority
+33 NBRC 100333 \N type material
+33 NCIMB 13349 \N type material
+34 ATCC 25232 \N type material
+34 CCUG 2079 \N type material
+34 CIP 107069 \N type material
+34 IFO 13542 \N type material
+34 Myxococcus xanthus \N scientific name
+34 Myxococcus xanthus Beebe 1941 \N authority
+34 Myxococcus xanthus retron Mx162 \N includes
+34 Myxococcus xanthus retron Mx65 \N includes
+34 NBRC 13542 \N type material
+35 "Chondrococcus macrosporus" Krzemieniewska and Krzemieniewski 1926 \N authority
+35 CIP 109128 \N type material
+35 Chondrococcus macrosporus \N synonym
+35 Corallococcus macrosporus \N scientific name
+35 Corallococcus macrosporus Reichenbach 2007 \N authority
+35 DSM 14697 \N type material
+35 JCM 12621 \N type material
+35 Myxococcus macrosporus \N synonym
+35 Myxococcus macrosporus (Krzemieniewska and Krzemieniewski 1926) Zahler and McCurdy 1974 (Approved Lists 1980) \N authority
+35 not "Myxococcus macrosporus" Zukal 1897 \N authority
+35 strain Cc m8 \N type material
+38 "Angiococcus disciformis" (Thaxter 1904) Jahn 1924 \N authority
+38 "Cystobacter disciformis" (Thaxter 1904) Brockman and McCurdy 1989 \N authority
+38 Angiococcus disciformis \N scientific name
+38 Angiococcus disciformis (Thaxter 1904) Hook et al. 1980 \N authority
+38 Cystobacter disciformis \N genbank synonym
+38 Myxococcus disciformis \N synonym
+38 Myxococcus disciformis Thaxter 1904 (Approved Lists 1980) \N authority
+39 Archangiaceae \N includes
+39 Archangiaceae Jahn 1924 \N authority
+39 Cystobacteraceae \N scientific name
+39 Cystobacteraceae McCurdy 1970 \N authority
+40 Stigmatella \N scientific name
+40 Stigmatella Berkeley and Curtis 1875 \N synonym
+41 "Chondromyces aurantiacus" (Berkeley and Curtis) Thaxter 1892 \N authority
+41 ATCC 25190 \N type material
+41 Chondromyces aurantiacus \N synonym
+41 Stigmatella aurantiaca \N scientific name
+41 Stigmatella aurantiaca Berkeley and Curtis 1875 \N authority
+42 "Angiococcus" Jahn 1924 \N authority
+42 Angiococcus \N includes
+42 Angiococcus (ex Jahn 1924) Hook et al. 1980 \N authority
+42 Cystobacter \N scientific name
+42 Cystobacter Schroeter 1886 \N authority
+43 "Polyangium fuscum" (Schroeter 1886) Thaxter 1904 \N authority
+43 ATCC 25194 \N type material
+43 Cystobacter fuscus \N scientific name
+43 Cystobacter fuscus Schroeter 1886 \N authority
+43 DSM 2262 \N type material
+43 Polyangium fuscum \N synonym
+44 Melittangium \N scientific name
+44 Melittangium Jahn 1924 \N synonym
+45 "Chondromyces gracilipes" Thaxter 1897 \N authority
+45 "Chondromyces lichenicolus" Thaxter 1892 \N authority
+45 "Chondromyces minor" Krzemieniewska and Krzemieniewski 1930 \N authority
+45 "Podangium gracilipes" (Thaxter 1897) Jahn 1924 \N authority
+45 "Podangium lichenicolum" (Thaxter 1892) Jahn 1924 \N authority
+45 ATCC 25944 \N type material
+45 Chondromyces gracilipes \N synonym
+45 Chondromyces lichenicolus \N synonym
+45 Chondromyces minor \N synonym
+45 Melittangium lichenicola \N scientific name
+45 Melittangium lichenicola (Thaxter 1892) McCurdy 1971 \N authority
+45 Podangium gracilipes \N synonym
+45 Podangium lichenicolum \N synonym
+47 Archangium \N scientific name
+47 Archangium Jahn 1924 \N synonym
+48 "Chondrococcus cerebriformis" (Kofler) Jahn 1924 \N synonym
+48 "Chondromyces serpens" Quehl 1906 \N synonym
+48 "Myxococcus cerebriformis" Kofler 1913 \N synonym
+48 ATCC 25201 \N type material
+48 Archangium gephyra \N scientific name
+48 Archangium gephyra Jahn 1924 \N synonym
+48 Chondrococcus cerebriformis \N synonym
+48 Chondromyces serpens \N synonym
+48 DSM 2261 \N type material
+48 Myxococcus cerebriformis \N synonym
+49 "Sorangiaceae" Jahn 1924 \N authority
+49 Polyangiaceae \N scientific name
+49 Polyangiaceae Jahn 1924 \N authority
+49 Sorangiaceae \N includes
+50 "Myxobotrys" Zukal 1896 \N authority
+50 "Polycephalum" Kalchbrenner and Cooke 1880 \N authority
+50 Chondromyces \N scientific name
+50 Chondromyces Berkeley and Curtis 1874 \N authority
+50 Chrondromyces \N misspelling
+50 Myxobotrys \N synonym
+50 Polycephalum \N synonym
+51 Chondromyces apiculatus \N scientific name
+51 Chondromyces apiculatus Thaxter 1897 \N authority
+51 Chrondromyces apiculatus \N misspelling
+51 TC 4481 \N type material
+52 "Myxobotrys variabilis" Zukal 1896 (putative synonym) \N synonym
+52 Chondromyces crocatus \N scientific name
+52 Chondromyces crocatus Berkeley and Curtis 1874 \N synonym
+52 Chrondromyces crocatus \N misspelling
+52 Myxobotrys variabilis \N synonym
+52 TC 601 \N type material
+53 Nannocystis \N scientific name
+53 Nannocystis Reichenbach 1970 \N authority
+54 ATCC 25963 \N type material
+54 DSM 71 \N type material
+54 Nannocystis exedens \N scientific name
+54 Nannocystis exedens Reichenbach 1970 \N synonym
+55 Polyangium \N scientific name
+55 Polyangium Link 1809 \N authority
+56 "Polyangium compositum" Thaxter 1904 "Polyangium compositum" Thaxter 1904 <Sorangium cellulosum> authority
+56 "Sorangium cellulosum" (Imshenetski and Solntseva 1936) Imshenetski and Solntseva 1937 \N authority
+56 "Sorangium compositum" Jahn 1924 \N authority
+56 "Sorangium compositum" Krzemieniewska and Krzemieniewski 1937 \N authority
+56 "Sorangium nigrescens" Krzemieniewska and Krzemieniewski 1937 \N authority
+56 "Sorangium nigrum" Krzemieniewska and Krzemieniewski 1937 \N authority
+56 CIP 109122 \N type material
+56 DSM 14627 \N type material
+56 JCM 12707 \N type material
+56 Polyangium cellulosum \N synonym
+56 Polyangium cellulosum (ex Imshenetski and Solntseva 1936) Brockman 1989 \N authority
+56 Polyangium compositum Polyangium compositum <Sorangium cellulosum> synonym
+56 Sorangium cellulosum \N scientific name
+56 Sorangium cellulosum (Brockman 1989) Reichenbach 2007 \N authority
+56 Sorangium compositum Sorangium compositum <Sorangium cellulosum> synonym
+56 Sorangium nigrescens \N synonym
+56 Sorangium nigrum \N synonym
+56 strain So ce1871 \N type material
+57 Polyangium sp. \N scientific name
+59 Vitreoscilla \N scientific name
+59 Vitreoscilla Pringsheim 1949 \N synonym
+60 Vitreoscilla sp. \N scientific name
+61 ATCC 15218 \N type material
+61 DSM 513 \N type material
+61 LMG 7756 \N type material
+61 Vitreoscilla stercoraria \N scientific name
+61 Vitreoscilla stercoraria Pringsheim 1951 (Approved Lists 1980) emend. Strohl et al. 1986 \N synonym
+62 ATCC 43189 \N type material
+62 Vitreoscilla beggiatoides \N scientific name
+62 Vitreoscilla beggiatoides Pringsheim 1949 (Approved Lists 1980) emend. Strohl et al. 1986 \N synonym
+62 strain B23SS \N type material
+63 "Vitreoscilla filiformis" Pringsheim 1951 \N synonym
+63 ATCC 43190 \N type material
+63 Vitreoscilla filiformis \N scientific name
+63 Vitreoscilla filiformis (ex Pringsheim 1951) Strohl et al. 1986 \N synonym
+63 strain L1401-2 \N type material
+64 Herpetosiphon \N scientific name
+64 Herpetosiphon Holt and Lewin 1968 \N synonym
+65 ATCC 23779 \N type material
+65 CCUG 48726 \N type material
+65 DSM 785 \N type material
+65 HAMBI 1968 \N type material
+65 Herpetosiphon aurantiacus \N scientific name
+65 Herpetosiphon aurantiacus Holt and Lewin 1968 \N authority
+65 Herpetosiphon giganteus \N synonym
+68 Lysobacter \N scientific name
+68 Lysobacter Christensen and Cook 1978 (Approved Lists 1980) emend. Park et al. 2008 \N authority
+69 ATCC 29487 \N type material
+69 DSM 2043 \N type material
+69 LMG 8762 \N type material
+69 Lysobacter enzymogenes \N scientific name
+69 Lysobacter enzymogenes Christensen and Cook 1978 \N authority
+69 UASM 495 \N type material
+71 Simonsiella \N scientific name
+71 Simonsiella Schmid 1922 \N synonym
+72 "Caryophanon muelleri" (Schmid 1922) Peshkoff 1948 \N authority
+72 ATCC 29453 \N type material
+72 CCUG 30554 \N type material
+72 CIP 103436 \N type material
+72 Caryophanon muelleri \N synonym
+72 DSM 2579 \N type material
+72 LMG 7828 \N type material
+72 Scheibenbakterien \N common name
+72 Scheibenbakterien Muller 1911 \N common name
+72 Simonsiella muelleri \N scientific name
+72 Simonsiella muelleri Schmid 1922 \N authority
+75 Caulobacter \N scientific name
+75 Caulobacter Henrici and Johnson 1935 (Approved Lists 1980) emend. Abraham et al. 1999 \N synonym
+78 Caulobacter sp. \N scientific name
+80 'Caulobacter spinosum' \N synonym
+80 Caulobacter spinosum \N scientific name
+81 Hyphomicrobium \N scientific name
+81 Hyphomicrobium Stutzer and Hartleb 1898 \N authority
+81 Hyphomicrobium Stutzer and Hartleb 1899 (sic) \N authority
+82 Hyphomicrobium sp. \N scientific name
+83 ATCC 33404 \N type material
+83 Hyphomicrobium vulgare \N scientific name
+83 Hyphomicrobium vulgare Stutzer and Hartleb 1898 \N synonym
+83 Hyphomicrobium vulgare Stutzer and Hartleb 1899 (sic) \N synonym
+83 JCM 6889 \N type material
+83 NCIB 9698 \N type material
+84 ATCC 35216 \N type material
+84 DSM 5458 \N type material
+84 Hyphomicrobium methylovorum \N scientific name
+139 ATCC 35210 \N type material
+84 Hyphomicrobium methylovorum Izumi et al. 1983 \N synonym
+84 IFO 14180 \N type material
+84 JCM 6890 \N type material
+84 NBRC 14180 \N type material
+84 strain KM 146 \N type material
+85 Hyphomonas \N scientific name
+85 Hyphomonas (ex Pongratz 1957) Moore et al. 1984 emend. Weiner et al. 2000 \N authority
+86 ATCC 33883 \N type material
+86 DSM 5153 \N type material
+86 Hyphomonas jannaschiana \N scientific name
+86 Hyphomonas jannaschiana Weiner et al. 1985 \N authority
+86 strain VP2 \N type material
+87 Hyphomonas sp. \N scientific name
+88 "Chlamydothrix" Migula 1900 \N synonym
+88 "Detoniella" Trevisan in de Toni and Trevisan 1889 \N synonym
+88 Chlamydothrix \N synonym
+88 Detoniella \N synonym
+88 Leptothrix \N scientific name
+88 Leptothrix Kutzing 1843 \N synonym
+89 "Leptothrix crassa" Cholodny 1924 \N synonym
+89 "Leptothrix discophora" (Schwers 1912) Dorff 1934 \N synonym
+89 "Megalothrix discophora" Schwers 1912 \N synonym
+89 ATCC 43182 \N type material
+89 LMG 8141 \N type material
+89 Leptothrix crassa \N synonym
+89 Leptothrix discophora \N scientific name
+89 Leptothrix discophora (ex Schwers 1912) Spring et al. 1997 \N synonym
+89 Megalothrix discophora \N synonym
+89 strain SS-1 \N type material
+93 Stella \N scientific name
+93 Stella Vasilyeva 1985 \N synonym
+94 ATCC 43930 \N type material
+94 AUCM B-1137 \N type material
+94 DSM 5900 \N type material
+94 Stella humosa \N scientific name
+94 Stella humosa Vasilyeva 1985 \N synonym
+94 VKM B-1137 \N type material
+96 Gallionella \N scientific name
+96 Gallionella Ehrenberg 1838 \N authority
+97 "Chlamydothrix ferruginea" (Ehrenberg 1838) Migula 1900 \N authority
+97 "Spirillum ferrugineum" (Ehrenberg 1838) de Toni and Trevisan 1889 \N authority
+97 "Spirophyllum ferrugineum" (Ehrenberg 1838) Ellis 1907 \N authority
+97 Chlamydothrix ferruginea \N synonym
+97 Gallionella ferruginea \N scientific name
+97 Gallionella ferruginea Ehrenberg 1838 \N authority
+97 Spirillum ferrugineum \N synonym
+97 Spirophyllum ferrugineum \N synonym
+99 "Renobacter" Nikitin 1971 \N authority
+99 Ancylobacter \N scientific name
+99 Ancylobacter Raj 1983 \N authority
+99 Microcyclus Microcyclus <bacteria> synonym
+99 Microcyclus Orskov 1928 (Approved Lists 1980) \N authority
+99 Renobacter \N synonym
+100 ATCC 25396 \N type material
+100 Ancylobacter aquaticus \N scientific name
+100 Ancylobacter aquaticus (Orskov 1928) Raj 1983 \N synonym
+100 CCUG 1820 \N type material
+100 CCUG 30551 \N type material
+100 DSM 101 \N type material
+100 JCM 20518 \N type material
+100 LMG 4052 \N type material
+100 Microcyclus aquaticus \N synonym
+100 Microcyclus aquaticus Orskov 1928 (Approved Lists 1980) \N synonym
+100 NBRC 102453 \N type material
+100 VKM B-1287 \N type material
+100 strain rskov \N type material
+101 Flectobacillus \N scientific name
+101 Flectobacillus Larkin et al. 1977 (Approved Lists 1980) emend. Raj and Maloy 1990 \N authority
+102 ACAM 171 \N type material
+102 ATCC 43844 \N type material
+102 CIP 103112 \N type material
+102 Flectobacillus glomeratus \N synonym
+102 Flectobacillus glomeratus McGuire et al. 1988 \N authority
+102 LMG 13858 \N type material
+102 Polaribacter glomeratus \N scientific name
+102 Polaribacter glomeratus (McGuire et al. 1988) Gosink et al. 1998 \N authority
+102 UQM 3055 \N type material
+103 "Microcyclus major" Gromov 1963 \N authority
+103 ATCC 29496 \N type material
+103 DSM 103 \N type material
+103 Flectobacillus major \N scientific name
+103 Flectobacillus major (Gromov 1963) Larkin et al. 1977 \N authority
+103 LMG 13163 \N type material
+103 Microcyclus major \N synonym
+103 VKM B-859 \N type material
+104 "Microcyclus marinus" Raj 1976 \N authority
+104 ATCC 25205 \N type material
+104 Cyclibacterium marinum \N misspelling
+104 Cyclobacterium marinum \N scientific name
+104 Cyclobacterium marinum corrig. (Raj 1976) Raj and Maloy 1990 \N authority
+104 Cyclobacterium marinus \N synonym
+104 DSM 745 \N type material
+104 Flectobacillus marinus \N synonym
+104 Flectobacillus marinus (Raj 1976) Borrall and Larkin 1978 (Approved Lists 1980) \N authority
+104 LMG 13164 \N type material
+104 Microcyclus marinus \N synonym
+104 strain Raj \N type material
+105 Runella \N scientific name
+105 Runella Larkin and Williams 1978 \N authority
+106 ATCC 29530 \N type material
+106 DSM 19594 \N type material
+106 LMG 11500 \N type material
+106 Runella slithyformis \N scientific name
+106 Runella slithyformis Larkin and Williams 1978 \N authority
+107 Spirosoma \N scientific name
+107 Spirosoma Migula 1894 (Approved Lists 1980) emend. Finster et al. 2009 \N authority
+108 ATCC 33905 \N type material
+108 DSM 74 \N type material
+108 LMG 10896 \N type material
+108 Spirosoma linguale \N scientific name
+108 Spirosoma linguale Migula 1894 \N authority
+109 Blastobacter \N scientific name
+109 Blastobacter Zavarzin 1961 (Approved Lists 1980) emend. Sly 1985 \N synonym
+110 "Blastobacter viscosus" Loginova and Trotensko 1979 \N synonym
+110 "Blastobacter viscosus" Loginova and Trotsenok 1979 \N synonym
+110 ATCC BAA-298 \N type material
+110 Blastobacter viscosus \N synonym
+110 Blastobacter viscosus 7d \N includes
+110 VKM B-2253 \N type material
+110 Xanthobacter viscosus \N scientific name
+110 Xanthobacter viscosus Doronina and Trotsenko 2003 \N synonym
+110 strain 7d \N type material
+112 "Planctomycetales" Schlesner and Stackebrandt 1987 emend. Ward 2011 \N authority
+112 Planctomycetales \N scientific name
+112 Planctomycetales Schlesner and Stackebrandt 1987 \N authority
+112 planctomycetes planctomycetes<blast112> blast name
+113 Gemmata \N scientific name
+113 Gemmata Franzmann and Skerman 1985 \N authority
+114 DSM 5831 \N type material
+114 Gemmata obscuriglobus \N scientific name
+114 Gemmata obscuriglobus Franzmann and Skerman 1985 \N authority
+114 UQM 2246 \N type material
+117 Pirella sp. \N misspelling
+117 Pirellula sp. \N scientific name
+118 "Acinothrix" Novacek 1938 \N authority
+118 "Blastocaulis" Henrici and Johnson 1935 \N authority
+118 Acinothrix \N synonym
+118 Blastocaulis \N synonym
+118 Planctomyces \N scientific name
+118 Planctomyces Gimesi 1924 \N authority
+119 ATCC 49424 \N type material
+119 DSM 5305 \N type material
+119 IFAM 1448 \N type material
+119 JCM 21570 \N type material
+119 NBRC 103401 \N type material
+119 Planctomyces brasiliensis \N scientific name
+119 Planctomyces brasiliensis Schlesner 1990 \N authority
+120 ATCC 43296 \N type material
+120 DSM 3776 \N type material
+120 IFAM 1008 \N type material
+120 Planctomyces limnophilus \N scientific name
+120 Planctomyces limnophilus Hirsch and Muller 1986 \N authority
+120 strain M 290 \N type material
+122 "Planctomyces maris" Bauld and Staley 1976 \N authority
+122 ATCC 29201 \N type material
+122 DSM 8797 \N type material
+122 Planctomyces maris \N scientific name
+122 Planctomyces maris (ex Bauld and Staley 1976) Bauld and Staley 1980 \N authority
+122 strain 534-30 \N type material
+123 Pirella Pirella <bacterial misnomer> misnomer
+123 Pirella Schlesner and Hirsch 1984 \N authority
+123 Pirellula \N scientific name
+123 Pirellula Schlesner and Hirsch 1987 emend. Schlesner et al. 2004 \N authority
+123 Pivellula \N misspelling
+124 ATCC 49069 \N type material
+124 Blastopirellula marina \N scientific name
+124 Blastopirellula marina (Schlesner 1987) Schlesner et al. 2004 \N authority
+124 DSM 3645 \N type material
+124 IFAM 1313 \N type material
+124 Pirella marina \N misnomer
+124 Pirella marina Schlesner 1987 \N authority
+124 Pirellula marina \N synonym
+124 Pirellula marina (Schlesner 1987) Schlesner and Hirsch 1987 \N authority
+124 Pivellula marina \N misspelling
+124 strain SH 106 \N type material
+125 ATCC 27377 \N type material
+125 DSM 6068 \N type material
+125 Pasteuria ramosa ATCC 27377 \N includes
+125 Pirella staleyi \N misnomer
+125 Pirella staleyi Schlesner and Hirsch 1984 \N authority
+125 Pirellula staleyi \N scientific name
+125 Pirellula staleyi (Schlesner and Hirsch 1984) Schlesner and Hirsch 1987 \N authority
+125 Planctomyces staleyi \N misnomer
+126 "Planctomycetaceae" Schlesner and Stackebrandt 1987 emend. Ward 2011 \N authority
+126 Planctomycetaceae \N scientific name
+126 Planctomycetaceae Schlesner and Stackebrandt 1987 \N authority
+127 Isosphaera \N scientific name
+127 Isosphaera Giovannoni et al. 1995 \N authority
+128 "Isocystis pallida" Woronichin 1927 (as cyanobacterium) \N authority
+128 "Torulopsidosira pallida" (Woronichin 1927) Geitler 1963 (as a yeast) \N authority
+128 ATCC 43644 \N type material
+128 DSM 9630 \N type material
+128 Isocystis pallida \N synonym
+128 Isosphaera pallida \N scientific name
+128 Isosphaera pallida (ex Woronichin 1927) Giovannoni et al. 1995 \N authority
+128 Torulopsidosira pallida \N synonym
+128 strain IS1B \N type material
+131 Tuberoidobacter \N scientific name
+132 'Tuberoidobacter mutans' \N synonym
+132 Tuberoidobacter mutans \N scientific name
+133 Methylocystis \N scientific name
+133 Methylocystis (ex Whittenbury et al. 1970) Bowman et al. 1993 emend. Dedysh et al. 2007 \N authority
+134 ACM 3309 \N type material
+134 ATCC 35066 \N type material
+134 IMET 10483 \N type material
+134 Methylocystis parva \N misspelling
+134 Methylocystis parvus \N scientific name
+134 Methylocystis parvus Bowman et al. 1993 \N authority
+134 NCIMB 11129 \N type material
+134 UNIQEM 38 \N type material
+134 VKM B-2129 \N type material
+134 strain OBBP \N type material
+136 Spirochaetales \N scientific name
+136 Spirochaetales Buchanan 1917 \N authority
+136 spirochetes spirochetes<blast136> blast name
+137 "Spirochaetaceae" Swellengrebel 1907 emend. Abt et al. 2012 \N authority
+137 Spirochaetaceae \N scientific name
+137 Spirochaetaceae Swellengrebel 1907 \N authority
+137 Treponemataceae Treponemataceae <Spirochaetaceae> in-part
+137 Treponemataceae Robinson 1948 (Approved Lists 1980) Treponemataceae Robinson 1948 (Approved Lists 1980) <Spirochaetaceae> authority
+138 Borrelia \N scientific name
+138 Borrelia Swellengrebel 1907 \N authority
+139 Borrelia burdorferi \N misspelling
+139 Borrelia burgdorferi \N scientific name
+139 Borrelia burgdorferi Johnson et al. 1984 emend. Baranton et al. 1992 \N authority
+139 Borrelia burgdorferi sensu stricto \N equivalent name
+139 Borrelia burgdorffragment \N misspelling
+139 CIP 102532 \N type material
+139 DSM 4680 \N type material
+139 Lyme disease spirochete \N genbank common name
+139 strain B31 strain B31 <Borrelia burgdorferi> type material
+140 "Spirochaeta hermsi" (sic) Davis 1942 \N authority
+140 Borrelia hermsii \N scientific name
+140 Borrelia hermsii (Davis 1942) Steinhaus 1946 \N authority
+140 Spirochaeta hermsi \N synonym
+141 "Spirochaeta parkeri" Davis 1942 \N synonym
+141 Borrelia parkeri \N scientific name
+141 Borrelia parkeri (Davis 1942) Steinhaus 1946 \N synonym
+141 Spirochaeta parkeri \N synonym
+142 "Spirochaeta turicatae" Brumpt 1933 \N synonym
+142 Borrelia turicatae \N scientific name
+142 Borrelia turicatae (Brumpt 1933) Steinhaus 1946 \N synonym
+142 Spirochaeta turicatae \N synonym
+143 "Spirochaeta anserina" Sakharoff 1891 \N authority
+143 "Spirochaete gallinarum" (sic) Stephens and Christophers 1904 \N authority
+143 "Spiroschaudinnia anserina" (Sakharoff 1891) Sambon 1907 \N authority
+143 Borrelia anserina \N scientific name
+143 Borrelia anserina (Sakharoff 1891) Bergey et al. 1925 \N authority
+143 Spirochaeta anserina \N synonym
+143 Spirochaete gallinarum \N synonym
+143 Spiroschaudinnia anserina \N synonym
+144 ATCC 43381 \N type material
+144 Borrelia coriaceae \N scientific name
+144 Borrelia coriaceae Johnson et al. 1987 \N synonym
+144 CIP 104208 \N type material
+144 strain Co53 \N type material
+145 Borrelia sp. \N scientific name
+146 "Ehrenbergia" Gieszczykiewiez 1939 \N authority
+146 "Spirochaete" Cohn 1872 (orthographic variant of Spirochaeta) \N authority
+146 "Spirochoeta" Dujardin 1841 (orthographic variant of Spirochaeta) \N authority
+146 Ehrenbergia \N synonym
+146 Spirochaeta \N scientific name
+146 Spirochaeta Ehrenberg 1835 (Approved Lists 1980) emend. Pikuta et al. 2009 \N authority
+146 Spirochaete \N synonym
+146 Spirochoeta \N synonym
+147 "Spirochaeta aurantia" Vinzent 1926 \N synonym
+147 ATCC 25082 \N type material
+147 DSM 1902 \N type material
+147 Spirochaeta aurantia \N scientific name
+147 Spirochaeta aurantia (ex Vinzent 1926) Canale-Parola 1980 \N synonym
+148 ATCC 35968 \N type material
+148 DSM 16054 \N type material
+148 Spirochaeta bajacaliforniensis \N scientific name
+148 Spirochaeta bajacaliforniensis Fracek and Stolz 2004 \N synonym
+148 strain BA-2 \N type material
+149 ATCC 29478 \N type material
+149 DSM 10522 \N type material
+149 Spirochaeta halophila \N scientific name
+149 Spirochaeta halophila Greenberg and Canale-Parola 1977 \N synonym
+150 ATCC 33939 \N type material
+150 DSM 2461 \N type material
+150 Spirochaeta isovalerica \N scientific name
+150 Spirochaeta isovalerica Harwood and Canale-Parola 1983 \N synonym
+150 strain MA-2 strain MA-2 <Spirochaeta isovalerica> type material
+151 "Spirochaeta litoralis" Hespell and Canale-Parola 1970 \N synonym
+151 ATCC 27000 \N type material
+151 DSM 2029 \N type material
+151 Spirochaeta litoralis \N scientific name
+151 Spirochaeta litoralis (ex Hespell and Canale-Parola 1970) Canale-Parola 1980 \N synonym
+151 strain R1 strain R1 <Spirochaeta litoralis> type material
+152 ATCC 25083 \N type material
+152 DSM 2028 \N type material
+152 JCM 16534 \N type material
+152 Spirochaeta stenostrepta \N scientific name
+152 Spirochaeta stenostrepta Zuelzer 1912 \N authority
+154 ATCC 700085 \N type material
+154 DSM 6578 \N type material
+154 Spirochaeta thermophila \N scientific name
+154 Spirochaeta thermophila Aksenova et al. 1992 \N authority
+154 strain Z-1203 \N type material
+156 "Spirochaeta zuelzerae" (Veldkamp 1960) Canale-Parola, Udris and Mandel 1968 \N synonym
+156 "Treponema zuelzerae" Veldkamp 1960 \N synonym
+156 ATCC 19044 \N type material
+156 DSM 1903 \N type material
+156 Spirochaeta zuelzerae \N scientific name
+156 Spirochaeta zuelzerae (ex Veldkamp 1960) Canale-Parola 1980 \N synonym
+156 Spirochaeta zuelzeri \N misspelling
+156 Treponema zuelzerae \N synonym
+157 "Microspironema" Stiles and Pfender 1905 \N authority
+157 "Spironema" Vuillemin 1905 \N authority
+157 Microspironema \N synonym
+157 Treponema \N scientific name
+157 Treponema Schaudinn 1905 \N authority
+158 "Spirillum dentium" (Miller 1889) Sternberg 1892 \N authority
+158 "Spirochaeta ambigua" Seguin and Vinzent 1936 \N authority
+158 "Spirochaeta comandonii" Seguin and Vinzent 1936 \N authority
+158 "Spirochaeta dentium" (Miller 1889) Migula 1895 \N authority
+158 "Spirochaeta microdentium" (Noguchi 1912) Heim 1922 \N authority
+158 "Spirochaeta orthodonta" Hoffmann 1920 \N authority
+158 "Spirochaete denticola" Flugge 1886 \N authority
+158 "Spirochaete dentium" Miller 1889 \N authority
+158 "Spironema dentium" (Miller 1889) Gross 1912 \N authority
+158 "Treponema ambiguum" (Seguin and Vinzent 1936) Prevot 1940 \N authority
+158 "Treponema comandonii" (Seguin and Vinzent 1936) Prevot 1940 \N authority
+158 "Treponema dentium" (Miller 1889) Dobell 1912 \N authority
+158 "Treponema dentium-stenogyratum" Pettit 1928 \N authority
+158 "Treponema microdentium" Noguchi 1912 \N authority
+158 "Treponema orthodontum" (Hoffmann 1920) Noguchi 1928 \N authority
+158 ATCC 35405 \N type material
+158 CIP 103919 \N type material
+158 DSM 14222 \N type material
+158 JCM 8153 \N type material
+158 Spirillum dentium \N synonym
+158 Spirochaeta ambigua \N synonym
+158 Spirochaeta comandonii \N synonym
+158 Spirochaeta dentium \N synonym
+158 Spirochaeta microdentium \N synonym
+158 Spirochaeta orthodonta \N synonym
+158 Spirochaete denticola \N synonym
+158 Spirochaete dentium \N synonym
+158 Spironema dentium \N synonym
+158 Treponema ambiguum \N synonym
+158 Treponema comandonii \N synonym
+158 Treponema denticola \N scientific name
+158 Treponema denticola (ex Brumpt 1925) Chan et al. 1993 \N authority
+158 Treponema denticola (ex Flugge 1886) Chan et al. 1993 \N authority
+158 Treponema dentium \N synonym
+158 Treponema dentium-stenogyratum \N synonym
+158 Treponema microdentium \N synonym
+158 Treponema orthodontum \N synonym
+159 ATCC 27164 \N type material
+159 Brachyspira hyodysenteriae \N scientific name
+159 Brachyspira hyodysenteriae (Harris et al. 1972) Ochiai et al. 1998 \N authority
+159 CCUG 46668 \N type material
+159 NCTC 13041 \N type material
+159 Serpula hyodysenteriae \N misnomer
+159 Serpula hyodysenteriae (Harris et al. 1972) Stanton et al. 1991 \N authority
+159 Serpulina hyodysenteriae \N synonym
+159 Serpulina hyodysenteriae (Harris et al. 1972) Stanton 1992 \N authority
+159 Treponema hyodysenteriae \N synonym
+159 Treponema hyodysenteriae Harris et al. 1972 (Approved Lists 1980) \N authority
+159 strain B78 \N type material
+160 "Microspironema pallidum" (Schaudinn and Hoffmann 1905) Stiles and Pfender 1905 \N authority
+160 "Spirillum pallidum" (Schaudinn and Hoffmann 1905) Mace 1913 \N authority
+160 "Spirochaeta pallida" Schaudinn and Hoffmann 1905 \N authority
+160 "Spironema pallidum" (Schaudinn and Hoffmann 1905) Vuillemin 1905 \N authority
+160 Microspironema pallidum \N synonym
+160 Spirillum pallidum \N synonym
+160 Spirochaeta pallida \N synonym
+160 Spironema pallidum \N synonym
+160 Treponema pallidum \N scientific name
+160 Treponema pallidum (Schaudinn and Hoffmann 1905) Schaudinn 1905 \N authority
+161 "Treponema pallidum subsp. pallidum" (Schaudinn and Hoffmann 1905) Schaudinn 1905 \N authority
+161 Treponema pallidum pallidum \N equivalent name
+161 Treponema pallidum subsp. pallidum \N scientific name
+161 syphilis treponeme \N genbank common name
+162 "Treponema phagedenis" (Noguchi 1912) Brumpt \N authority
+162 Treponema phagedenis \N scientific name
+163 ATCC 33254 \N type material
+163 DSM 1788 \N type material
+163 Treponema bryantii \N scientific name
+163 Treponema bryantii Stanton and Canale-Parola 1980 \N authority
+163 strain RUS-1 \N type material
+164 ATCC 33768 \N type material
+164 Treponema pectinivorum \N equivalent name
+164 Treponema pectinovorum \N scientific name
+164 Treponema pectinovorum Smibert and Burmeister 1983 \N authority
+164 VPI D-36DR-2 \N type material
+165 ATCC 43261 \N type material
+165 DSM 2985 \N type material
+165 Treponema saccharophilum \N scientific name
+165 Treponema saccharophilum Paster and Canale-Parola 1986 \N authority
+165 Treponema sacchrophilum \N misspelling
+166 Treponema sp. \N scientific name
+167 ATCC 33096 \N type material
+167 DSM 2489 \N type material
+167 Treponema succinifaciens \N scientific name
+167 Treponema succinifaciens Cwyk and Canale-Parola 1981 \N authority
+167 strain 6091 \N type material
+168 "Treponema pallidum subsp. pertenue" Smibert 1984 \N authority
+168 Treponema pallidium subsp. pertenue \N misspelling
+168 Treponema pallidum pertenue \N equivalent name
+168 Treponema pallidum subsp. pertenue \N scientific name
+168 Treponema pertenue \N synonym
+168 yaws treponeme \N genbank common name
+170 Leptospiraceae \N scientific name
+170 Leptospiraceae Hovind-Hougen 1979 (Approved Lists 1980) emend. Levett et al. 2005 \N authority
+170 Leptospiraceae Hovind-Houger (sic) 1978 (sic) \N authority
+170 Treponemataceae Treponemataceae <Leptospiraceae> in-part
+170 Treponemataceae Robinson 1948 (Approved Lists 1980) Treponemataceae Robinson 1948 (Approved Lists 1980) <Leptospiraceae> authority
+171 Ancona \N misnomer
+171 Canela \N misnomer
+171 Jequitaia \N misnomer
+171 Leptospira \N scientific name
+171 Leptospira Noguchi 1917 (Approved Lists 1980) emend. Faine and Stallman 1982 \N authority
+172 "Spirochaeta biflexa" Wolbach and Binger 1914 "Spirochaeta biflexa" Wolbach and Binger 1914 <Leptospira biflexa> authority
+172 ATCC 23582 \N type material
+172 Leptospira biflexa \N scientific name
+172 Leptospira biflexa (Wolbach and Binger 1914) Noguchi 1918 (Approved Lists 1980) emend. Faine and Stallman 1982 \N authority
+172 Spirochaeta biflexa Spirochaeta biflexa <Leptospira biflexa> in-part
+172 strain Patoc I \N type material
+173 "Leptospira icteroides" Noguchi 1919 \N authority
+173 "Spirochaeta biflexa" Wolbach and Binger 1914 "Spirochaeta biflexa" Wolbach and Binger 1914 <Leptospira interrogans> authority
+173 "Spirochaeta icterogenes" Uhlenhuth and Fromme 1916 \N authority
+173 "Spirochaeta icterohaemorrhagiae" Inada et al. 1916 \N authority
+173 "Spirochaeta interrogans" Stimson 1907 \N authority
+173 "Spirochaeta nodosa" Hubener and Reiter 1916 \N authority
+173 ATCC 23581 \N type material
+173 Leptospira icteroides \N synonym
+173 Leptospira interrogans \N scientific name
+173 Leptospira interrogans (Stimson 1907) Wenyon 1926 (Approved Lists 1980) emend. Faine and Stallman 1982 \N authority
+173 Spirochaeta biflexa Spirochaeta biflexa <Leptospira interrogans> in-part
+173 Spirochaeta icterogenes \N synonym
+173 Spirochaeta icterohaemorrhagiae \N synonym
+173 Spirochaeta interrogans \N synonym
+173 Spirochaeta nodosa \N synonym
+173 strain RGA \N type material
+174 ATCC 43292 \N type material
+174 DSM 21538 \N type material
+174 Leptospira borgpeterseni \N misspelling
+174 Leptospira borgpetersenii \N scientific name
+174 Leptospira borgpetersenii Yasuda et al. 1987 \N authority
+174 strain Veldrat Bataviae 46 \N type material
+176 Leptospira hardjo \N synonym
+176 Leptospira interrogans serovar Hardjo \N scientific name
+178 Leptospira sp. \N scientific name
+179 "Leptospirillum" Markosyan 1972 \N synonym
+179 Leptospirillum \N scientific name
+179 Leptospirillum (ex Markosyan 1972) Hippe 2000 \N synonym
+180 "Leptospirillum ferrooxidans" Markosyan 1972 \N authority
+180 ATCC 29047 \N type material
+180 DSM 2705 \N type material
+180 Leptospirillum ferrooxidans \N scientific name
+180 Leptospirillum ferrooxidans (ex Markosyan 1972) Hippe 2000 \N authority
+180 Leptospirillum ferroxidans \N misspelling
+180 VKM B-1339 \N type material
+181 Leptospirillum sp. \N scientific name
+183 "Leptospira illini" Hanson et al. 1974 \N authority
+183 Leptonema illini \N scientific name
+183 Leptonema illini Hovind-Hougen 1983 \N authority
+183 Leptonema illinoisense \N misspelling
+183 Leptospira illini \N synonym
+183 NCTC 11301 \N type material
+183 strain 3055 \N type material
+185 Wall less Spirochaeta sp. \N synonym
+185 wall-less Spirochaeta sp. \N synonym
+185 wall-less spirochete \N scientific name
+187 Aquaspirillum \N scientific name
+187 Aquaspirillum Hylemon et al. 1973 \N synonym
+188 ATCC 31632 \N type material
+188 Aquaspirillum magnetotacticum \N synonym
+188 Aquaspirillum magnetotacticum Maratea and Blakemore 1981 \N synonym
+188 DSM 3856 \N type material
+188 IFO 15272 \N type material
+188 JCM 21281 \N type material
+188 LMG 10894 \N type material
+188 Magnetospirillum magnetotacticum \N scientific name
+188 Magnetospirillum magnetotacticum (Maratea and Blakemore 1981) Schleifer et al. 1992 \N synonym
+188 NBRC 15272 \N type material
+189 "Spirillum itersonii" Giesberger 1936 \N authority
+189 Aquaspirillum itersoni \N misspelling
+189 Aquaspirillum itersonii \N synonym
+189 Aquaspirillum itersonii (Giesberger 1936) Hylemon et al. 1973 \N authority
+189 Novispirillum itersonii \N scientific name
+189 Novispirillum itersonii (Giesberger 1936) Yoon et al. 2007 \N authority
+189 Novospirillum itersonii \N misspelling
+189 Spirillum itersoni \N misspelling
+189 Spirillum itersonii \N synonym
+190 "Spirillum serpens" (Muller 1786) Winter 1884 \N synonym
+190 "Vibrio serpens" Muller 1786 \N synonym
+190 ATCC 12638 \N type material
+190 Aquaspirillum bengal \N synonym
+190 Aquaspirillum bengal Kumar et al. 1974 (Approved Lists 1980) \N synonym
+190 Aquaspirillum serpens \N scientific name
+190 Aquaspirillum serpens (Muller 1786) Hylemon et al. 1973 (AL 1980) emend. Boivin et al. 1985 \N synonym
+190 CCUG 2092 \N type material
+190 CIP 63.19 \N type material
+190 DSM 68 \N type material
+190 IFO 14924 \N type material
+190 JCM 20995 \N type material
+190 LMG 3734 \N type material
+190 NBRC 14924 \N type material
+190 NCTC 10593 \N type material
+190 Spirillum serpens \N synonym
+190 Vibrio serpens \N synonym
+191 Azospirillum \N scientific name
+191 Azospirillum Tarrand et al. 1979 (Approved Lists 1980) emend. Falk et al. 1985 \N authority
+192 ATCC 29145 \N type material
+192 Azospirillum brasilense \N scientific name
+192 Azospirillum brasilense corrig. Tarrand et al. 1979 \N authority
+192 Azospirillum brasiliense \N synonym
+192 DSM 1690 \N type material
+192 JCM 1224 \N type material
+192 LMG 13127 \N type material
+192 NBRC 102289 \N type material
+192 NRRL B-14647 \N type material
+192 Roseomonas fauriae \N synonym
+192 Roseomonas fauriae Rihs et al. 1998 \N authority
+192 Spirillum lipoferum \N synonym
+192 VKM B-1547 \N type material
+192 bacterium ASAZOES-148 \N includes
+192 strain sp. 7 \N type material
+193 "Spirillum lipoferum" Beijerinck 1925 \N authority
+193 ATCC 29707 \N type material
+193 Azospirillum lipoferum \N scientific name
+193 Azospirillum lipoferum (Beijerinck 1925) Tarrand et al. 1979 \N authority
+193 CIP 106280 \N type material
+193 DSM 1691 \N type material
+193 JCM 1247 \N type material
+193 LMG 13128 \N type material
+193 NBRC 102290 \N type material
+193 NCAIM B.01801 \N type material
+193 NRRL B-14654 \N type material
+193 VKM B-1519 \N type material
+193 strain sp. 59b \N type material
+194 Ampylobacter \N misspelling
+194 Campylobacter \N scientific name
+194 Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Tanner et al. 1981 \N authority
+206 ATCC 35980 \N type material
+194 Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Vandamme et al. 1991 \N authority
+194 Campylobacter Sebald and Veron 1963 (Approved Lists 1980) emend. Vandamme et al. 2010 \N authority
+195 "Vibrio coli" Doyle 1948 \N authority
+195 ATCC 33559 \N type material
+195 CCUG 11283 \N type material
+195 CCUG 14540 \N type material
+195 CIP 70.80 \N type material
+195 Campylobacter coli \N scientific name
+195 Campylobacter coli (Doyle 1948) Veron and Chatelain 1973 \N authority
+195 Campylobacter hyoilei \N genbank synonym
+195 Campylobacter hyoilei Alderton et al. 1995 \N authority
+195 DSM 4689 \N type material
+195 JCM 2529 \N type material
+195 LMG 6440 \N type material
+195 NCTC 11366 \N type material
+195 Vibrio coli \N synonym
+196 "Spirillum fetus" Lehmann and Neumann 1927 \N synonym
+196 "Vibrio fetus" Smith and Taylor 1919 \N synonym
+196 ATCC 27374 \N type material
+196 CCUG 6823 A \N type material
+196 CIP 53.96 \N type material
+196 Campylobacter fetus \N scientific name
+196 Campylobacter fetus (Smith and Taylor 1919) Sebald and Veron 1963 \N synonym
+196 DSM 5361 \N type material
+196 JCM 2527 \N type material
+196 LMG 6442 \N type material
+196 NCTC 10842 \N type material
+196 Spirillum fetus \N synonym
+196 Vibrio fetus \N synonym
+197 "Campylobacter fetus subsp. jejuni" Smibert 1974 \N authority
+197 "Vibrio hepaticus" Mathey and Rissberger 1964 \N authority
+197 "Vibrio jejuni" Jones et al. 1931 \N authority
+197 ATCC 33560 \N type material
+197 Ampylobacter jejuni \N misspelling
+197 CCUG 11284 \N type material
+197 CIP 70.2 \N type material
+197 Campylobacter fetus subsp. jejuni \N synonym
+197 Campylobacter jejuni \N scientific name
+197 Campylobacter jejuni (Jones et al. 1931) Veron and Chatelain 1973 \N authority
+197 DSM 4688 \N type material
+197 LMG 8841 \N type material
+197 NCTC 11351 \N type material
+197 Vibrio hepaticus \N synonym
+197 Vibrio jejuni \N synonym
+198 ATCC 35217 \N type material
+198 CCUG 14169 \N type material
+198 CIP 103746 \N type material
+198 Campylobacter hyointestinalis \N scientific name
+198 Campylobacter hyointestinalis Gebhart et al. 1985 emend. On et al. 1995 \N authority
+198 DSM 19053 \N type material
+198 LMG 7817 \N type material
+198 NCTC 11608 \N type material
+198 strain 80-4577-4 \N type material
+199 ATCC 33237 \N type material
+199 CCUG 13144 \N type material
+199 CIP 103757 \N type material
+199 Campylobacter concisus \N scientific name
+199 Campylobacter concisus Tanner et al. 1981 \N authority
+199 DSM 9716 \N type material
+199 FDC 484 \N type material
+199 LMG 7788 \N type material
+199 NCTC 11485 \N type material
+200 ATCC 35224 \N type material
+200 CCUG 13146 \N type material
+200 CIP 103747 \N type material
+200 Campylobacter curvus \N scientific name
+200 Campylobacter curvus (Tanner et al. 1984) Vandamme et al. 1991 \N synonym
+200 DSM 6644 \N type material
+200 LMG 7609 \N type material
+200 NCTC 11649 \N type material
+200 VPI 9584 \N type material
+200 Wolinella curva \N synonym
+200 Wolinella curva Tanner et al. 1984 \N synonym
+201 ATCC 35221 \N type material
+201 CCUG 23947 \N type material
+201 CIP 102722 \N type material
+201 Campylobacter lari \N scientific name
+201 Campylobacter lari corrig. Benjamin et al. 1984 emend. Debruyne et al. 2009 \N authority
+201 Campylobacter laridis \N synonym
+201 DSM 11375 \N type material
+201 JCM 2530 \N type material
+201 LMG 8846 \N type material
+201 NCTC 11352 \N type material
+201 WRI 3034/77 \N type material
+202 ATCC 43264 \N type material
+202 CCUG 6822 \N type material
+202 CIP 103750 \N type material
+202 Campylobacter mucosalis \N scientific name
+202 Campylobacter mucosalis (Lawson et al. 1981) Roop et al. 1985 \N authority
+202 Campylobacter sputorum mucosalis \N synonym
+202 Campylobacter sputorum subsp. mucosalis (ex Lawson and Rowland 1974) Lawson et al. 1981 \N authority
+202 Campylobacter sputorum supsp. mucosalis \N synonym
+202 DSM 21682 \N type material
+202 NCTC 11000 \N type material
+202 strain FS253/72 \N type material
+203 ATCC 33238 \N type material
+203 CCUG 20446 B \N type material
+203 CIP 103748 \N type material
+203 Campylobacter rectus \N scientific name
+203 Campylobacter rectus (Tanner et al. 1981) Vandamme et al. 1991 \N synonym
+203 DSM 3260 \N type material
+203 FDC 371 \N type material
+203 JCM 6301 \N type material
+203 NCTC 11489 \N type material
+203 Wolinella recta \N synonym
+203 Wolinella recta Tanner et al. 1981 \N synonym
+204 ATCC 51146 \N type material
+204 CCUG 30254 \N type material
+204 CIP 103970 \N type material
+204 Campylobacter showae \N scientific name
+204 Campylobacter showae Etoh et al. 1993 \N authority
+204 JCM 12989 \N type material
+204 LMG 12635 \N type material
+204 strain SU A4 \N type material
+205 Campylobacter sp. \N scientific name
+206 "Vibrio sputorum" Prevot 1940 \N authority
+206 ATCC 33562 \N type material
+206 CCUG 9728 \N type material
+206 CIP 103749 \N type material
+206 Campylobacter sputorum \N scientific name
+206 Campylobacter sputorum (Prevot 1940) Veron and Chatelain 1973 (Approved Lists 1980) emend. On et al. 1998 \N authority
+206 Campylobacter sputorum (Prevot 1940) Veron and Chatelain 1973 (Aproved Lists 1980) emend. Roop et al. 1986 \N authority
+206 LMG 7795 \N type material
+206 NCTC 11528 \N type material
+206 VPI S-17 \N type material
+206 Vibrio sputorum \N synonym
+206 strain Forsyth ER33 \N type material
+207 Campylobacter jejuni-like bacterium \N scientific name
+209 Gastrospirillum \N includes
+209 Helicobacter \N scientific name
+209 Helicobacter Goodwin et al. 1989 emend. Vandamme et al. 1991 \N authority
+210 ATCC 43504 \N type material
+210 CCUG 15815 B \N type material
+210 CCUG 17874 \N type material
+210 CCUG 39500 \N type material
+210 CIP 103995 \N type material
+210 Campylobacter pylori \N synonym
+210 Campylobacter pylori Marshall et al. 1985 corrig. Marshall and Goodwin 1987 \N authority
+210 Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1988 \N authority
+210 Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1989 \N authority
+210 Campylobacter pylori subsp. pylori \N synonym
+210 Campylobacter pylori subsp. pylori Marshall et al. 1985 \N authority
+210 Campylobacter pyloridis \N synonym
+210 Campylobacter pyloridis Marshall et al.1985 \N authority
+210 DSM 21031 \N type material
+210 DSM 4867 \N type material
+210 Helicobacter nemestrinae \N synonym
+210 Helicobacter nemestrinae Bronsdon et al. 1991 \N authority
+210 Helicobacter pylori \N scientific name
+210 Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989 \N authority
+210 JCM 12093 \N type material
+210 LMG 18041 \N type material
+210 LMG 19449 \N type material
+210 NCTC 11637 \N type material
+210 strain Royal Perth Hospital 13487 \N type material
+211 Helicobacter CLO3 \N synonym
+211 Helicobacter sp. (strain CLO3) \N synonym
+211 Helicobacter sp. CLO-3 \N scientific name
+211 Helicobacter sp. CLO3 \N synonym
+212 ATCC 51101 \N type material
+212 CCUG 29263 \N type material
+212 CIP 104247 \N type material
+212 Helicobacter acinonychis \N scientific name
+212 Helicobacter acinonychis corrig. Eaton et al. 1993 \N synonym
+212 Helicobacter acinonyx \N synonym
+212 NCTC 12686 \N type material
+212 strain 90-119 \N type material
+213 "Helicobacter westmeadii" Trivett-Moore et al. 1997 \N authority
+213 CCUG 18818 \N type material
+213 CIP 103752 \N type material
+213 Campylobacter cinaedi \N synonym
+213 Campylobacter cinaedi Totten et al. 1988 \N authority
+213 DSM 5359 \N type material
+213 Helicobacter cinaedi \N scientific name
+213 Helicobacter cinaedi (Totten et al. 1988) Vandamme et al. 1991 \N authority
+213 Helicobacter westmeadii \N synonym
+213 LMG 7543 \N type material
+213 NCTC 12423 \N type material
+213 strain Fennell 165 \N type material
+214 ATCC 49179 \N type material
+214 CIP 104382 \N type material
+214 Helicobacter felis \N scientific name
+214 Helicobacter felis Paster et al. 1991 \N authority
+214 NCTC 12436 \N type material
+215 ATCC 35684 \N type material
+215 CCUG 18820 \N type material
+215 CIP 103758 \N type material
+215 Campylobacter fennelliae \N synonym
+215 Campylobacter fennelliae Totten et al. 1988 \N authority
+215 DSM 7491 \N type material
+215 Helicobacter fennelliae \N scientific name
+215 Helicobacter fennelliae (Totten et al. 1988) Vandamme et al. 1991 \N authority
+215 NCTC 11612 \N type material
+215 strain Fennell 231 \N type material
+216 ATCC 49282 \N type material
+216 CCUG 29262 \N type material
+216 CIP 104248 \N type material
+216 DSM 22221 \N type material
+216 Helicobacter muridarum \N scientific name
+216 Helicobacter muridarum Lee et al. 1992 \N synonym
+216 LMG 13646 \N type material
+216 NCTC 12714 \N type material
+216 strain ST1 \N type material
+217 ATCC 43772 \N type material
+217 CCUG 25715 \N type material
+217 CIP 103759 \N type material
+217 Campylobacter mustelae \N synonym
+217 Campylobacter mustelae (Fox et al. 1988) Fox et al. 1989 \N synonym
+217 Campylobacter pylori mustelae \N synonym
+217 Campylobacter pylori subsp. mustelae \N synonym
+217 Campylobacter pylori subsp. mustelae Fox et al. 1988 \N synonym
+217 Helicobacter mustelae \N scientific name
+217 Helicobacter mustelae (Fox et al. 1988) Goodwin et al. 1989 \N synonym
+217 NCTC 12198 \N type material
+217 strain R85-13-6 \N type material
+218 Helicobacter sp. \N scientific name
+222 Achromobacter \N scientific name
+222 Achromobacter Yabuuchi and Yano 1981 emend. Yabuuchi et al. 1998 \N synonym
+223 "Achromobacter cycloclastes" (Gray and Thornton) Bergey et al. \N synonym
+223 'Achromobacter cycloclastes' \N synonym
+223 Achromobacter cycloclastes \N scientific name
+223 Achromobacter cycolclastes \N misspelling
+224 "Achromobacter lyticus" Isono et al. 1972 \N synonym
+224 'Achromobacter lyticus' \N synonym
+224 Achromobacter lyticus \N scientific name
+226 Alteromonas \N scientific name
+244 IFO 12536 \N type material
+226 Alteromonas Baumann et al. 1972 (Approved Lists 1980) emend. Gauthier et al. 1995 \N synonym
+226 Alteromonas Baumann et al. 1972 (Approved Lists 1980) emend. Novick and Tyler 1985 \N synonym
+226 Alteromonas Baumann et al. 1972 (Approved Lists 1980) emend. Van Trappen et al. 2004 \N synonym
+227 ATCC 43555 \N type material
+227 Alteromonas carrageenovora \N synonym
+227 CIP 103674 \N type material
+227 DSM 6820 \N type material
+227 IAM 12662 \N type material
+227 IFO 12985 \N type material
+227 JCM 8851 \N type material
+227 NBRC 12985 \N type material
+227 NCIMB 302 \N type material
+227 Pseudoalteromonas carrageenovora \N scientific name
+227 Pseudoalteromonas carrageenovora (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995 \N synonym
+228 "Alteromonas marinopraesens" (ZoBell and Upham 1944) Baumann et al. 1972 \N authority
+228 "Vibrio haloplanktis" ZoBell and Upham 1944 \N authority
+228 "Vibrio marinopraesens" ZoBell and Upham 1944 \N authority
+228 ATCC 14393 \N type material
+228 Alteromonas haloplanctis \N misspelling
+228 Alteromonas haloplanktis \N synonym
+228 Alteromonas haloplanktis (ZoBell and Upham 1944) Reichelt and Baumann 1973 (Approved Lists 1980) \N authority
+228 Alteromonas marinopraesens \N synonym
+228 CIP 103197 \N type material
+228 DSM 6060 \N type material
+228 IAM 12915 \N type material
+228 JCM 20767 \N type material
+228 LMG 2852 \N type material
+228 Moraxella sp. TAC 125 \N includes
+228 NBRC 102225 \N type material
+228 NCCB 71020 \N type material
+228 Pseudoalteromonas haloplanktis \N scientific name
+228 Pseudoalteromonas haloplanktis (ZoBell and Upham 1944) Gauthier et al. 1995 \N authority
+228 Psychrophilic bacterium (strain TAE 79) \N includes
+228 Vibrio haloplanktis \N synonym
+228 Vibrio marinopraesens \N synonym
+228 psychrophilic bacterium TAE 79 \N includes
+232 Alteromonas sp \N misspelling
+232 Alteromonas sp. \N scientific name
+234 Brucella \N scientific name
+234 Brucella Meyer and Shaw 1920 \N synonym
+235 "Bacillus of abortion" Bang 1897 \N authority
+235 "Bacterium abortus" Schmidt in Schmidt and Weis 1901 \N authority
+235 ATCC 23448 \N type material
+235 Bacterium abortus \N synonym
+235 Brucella abortus \N scientific name
+235 Brucella abortus (Schmidt 1901) Meyer and Shaw 1920 (Approved Lists 1980) \N authority
+235 Brucella melitensis (Hughes 1893) Meyer and Shaw 1920 (Approved Lists 1980) emend. Verger et al. 1985, biovar Abortus \N authority
+235 Brucella melitensis biovar Abortus \N genbank synonym
+235 Brucella melitensis bv. Abortus \N equivalent name
+235 NCTC 10093 \N type material
+235 strain 544 \N type material
+236 ATCC 25840 \N type material
+236 Brucella melitensis (Hughes 1893) Meyer and Shaw 1920 (Approved Lists 1980) emend. Verger et al. 1985, biovar Ovis \N authority
+236 Brucella melitensis biovar Ovis \N genbank synonym
+236 Brucella melitensis bv. Ovis \N equivalent name
+236 Brucella ovis \N scientific name
+236 Brucella ovis Buddle 1956 (Approved Lists 1980) \N authority
+236 Brucella ovis. \N misspelling
+236 NCTC 10512 \N type material
+236 not "Brucella ovis" van Drimmelen 1953 \N authority
+236 strain 63/290 \N type material
+237 Flavibacterium \N misspelling
+237 Flavobacterium \N scientific name
+237 Flavobacterium Bergey et al. 1923 (Approved Lists 1980) emend. Bernardet et al. 1996 \N authority
+238 ATCC 13253 \N type material
+238 CCUG 214 \N type material
+238 CIP 60.57 \N type material
+238 Chryseobacterium (Flavobacterium) meningosepticum \N synonym
+238 Chryseobacterium meningosepticum \N synonym
+238 Chryseobacterium meningosepticum (King 1959) Vandamme et al. 1994 \N authority
+238 DSM 2800 \N type material
+238 Elizabethkingia meningoseptica \N scientific name
+238 Elizabethkingia meningoseptica (King 1959) Kim et al. 2005 \N authority
+238 Flavobacterium menginosepticum \N misspelling
+238 Flavobacterium meningosepticum \N synonym
+238 Flavobacterium meningosepticum King 1959 (Approved Lists 1980) \N authority
+238 JCM 21065 \N type material
+238 LMG 12279 \N type material
+238 NBRC 12535 \N type material
+238 NCTC 10016 \N type material
+239 Flavibacterium sp. \N equivalent name
+239 Flavobacterium sp. \N scientific name
+240 Flavibacterium sp. 141-8 \N equivalent name
+240 Flavobacterium 141-8 \N synonym
+240 Flavobacterium sp. (strain 141-8) \N synonym
+240 Flavobacterium sp. 141-8 \N scientific name
+240 Flavobacterium sp. strain 141-8 \N synonym
+241 Flavibacterium sp. SC12154 \N equivalent name
+241 Flavobacterium SC12154 \N synonym
+241 Flavobacterium sp. (strain SC 12,154) \N synonym
+241 Flavobacterium sp. SC12154 \N scientific name
+241 Flavobacterium sp. strain SC 12154 \N synonym
+242 Flavibacterium sp. U-188 \N equivalent name
+242 Flavobacterium U-188 \N synonym
+242 Flavobacterium sp. (strain U-188) \N synonym
+242 Flavobacterium sp. U-188 \N scientific name
+244 ATCC 33414 \N type material
+244 CCM 320 \N type material
+244 CIP 105082 \N type material
+244 Flavobacterium okeanokoites \N synonym
+244 Flavobacterium okeanokoites (IFO 12536) \N includes
+244 Flavobacterium okeanokoites IFO12536 \N includes
+244 Flavobacterium okeanokoites ZoBell and Upham 1944 (Approved Lists 1980) \N authority
+244 Flavobacterium okeanoloites (IFO 12536) \N misspelling
+244 LMG 4030 \N type material
+244 NBRC 12536 \N type material
+244 NCIMB 561 \N type material
+244 Planococcus okeanokoites \N synonym
+244 Planococcus okeanokoites (ZoBell and Upham 1944) Nakagawa et al. 1996 \N authority
+244 Planococcus okeanokoites IFO 12536 \N includes
+244 Planococcus okeanokoites IFO12536 \N includes
+244 Planococcus okeanokoites Nakagawa et al. 1996 (sic) \N authority
+244 Planomicrobium okeanokoites \N scientific name
+244 Planomicrobium okeanokoites (Nakagawa et al. 1996) Yoon et al. 2001 (sic) \N authority
+244 Planomicrobium okeanokoites (ZoBell and Upham 1944) Yoon et al. 2001 \N authority
+244 Planomicrobium sp. K3B3a \N includes
+244 VKM B-1175 \N type material
+245 "Bacillus aquatilis" Frankland and Frankland 1889 \N authority
+245 "Bacterium aquatilis" (sic) (Frankland and Frankland 1889) Chester 1897 \N authority
+245 "Chromobacterium aquatilis" (sic) (Frankland and Frankland 1889) Topley and Wilson 1929 \N authority
+245 "Empedobacter aquatile" (sic) (Frankland and Frankland 1889) Brisou et al. 1960 \N authority
+245 "Flavobacterium aquatilis" (sic) (Frankland and Frankland 1889) Bergey et al. 1923 \N authority
+245 ATCC 11947 \N type material
+245 Bacillus aquatilis \N synonym
+245 Bacterium aquatilis \N synonym
+245 CCUG 29304 \N type material
+245 CIP 103744 \N type material
+245 CIP 55.141 \N type material
+245 Chromobacterium aquatilis \N synonym
+245 DSM 1132 \N type material
+245 Empedobacter aquatile \N synonym
+245 Flavibacterium aquatile \N equivalent name
+245 Flavobacterium aquatile \N scientific name
+245 Flavobacterium aquatile (...
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