Re: [Treebase-devel] search by DOI

[Hilmar L. <hl...@ne...>]

I agree this would be quite useful. At present all PhyloWS query attributes map directly to attributes of the data. Querying presence of absence of would be a departure from that.

I think ideally I'd like to see this supported through CDAO terms. Whether a tree has branch lengths or not is a piece of semantic metadata about the tree. A tree with branch lengths could be declared as an Instance of the subclass of trees that also have branch lengths.

	-hilmar

On Feb 20, 2012, at 8:41 PM, Carl Boettiger wrote:

> Hi Treebase developers,
> 
> How difficult would it be to include the ability to restrict phylows API queries to only trees having branch length data?  Can this be done already? If not, is it a straight forward modification?  I would find this very useful (and would reduce my load on the server, since otherwise I have to do pull down each tree and check if it has this data...)
> 
> Many thanks,
> 
> Carl
> 
> On Fri, Feb 17, 2012 at 10:32 AM, Rutger Vos <rut...@gm...> wrote:
> Hi all,
> 
> I've made some recent enhancements to the search facilities:
> 
> - there was a bug in searching by tree quality, this has now been corrected
> 
> - we can now search by doi, it is an option in the pull down menu on the study search page, and has also been added to the PhyloWS API:
> 
> http://purl.org/phylo/treebase/dev/phylows/study/find?query=prism.doi="10.1016/j.ympev.2009.03.021"
> 
> - I also added buttons to the twitter account and the mendeley group.
> 
> Maybe we can push these things to production?
> 
> Rutger
> 
> -- 
> Dr. Rutger A. Vos
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> Carl Boettiger
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: Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
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