[Treebase-guts] SF.net SVN: treebase:[909] trunk/treebase-core/src/main/java/org/cipres/ treebase/domain/tree/PhyloTree.java

[<hs...@us...>]

Revision: 909
          http://treebase.svn.sourceforge.net/treebase/?rev=909&view=rev
Author:   hshyket
Date:     2011-06-10 19:41:35 +0000 (Fri, 10 Jun 2011)

Log Message:
-----------
Fixing issue with semicolon not being at the end of the tree in a nexus file.

Modified Paths:
--------------
    trunk/treebase-core/src/main/java/org/cipres/treebase/domain/tree/PhyloTree.java

Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/domain/tree/PhyloTree.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/domain/tree/PhyloTree.java	2011-06-10 16:47:32 UTC (rev 908)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/domain/tree/PhyloTree.java	2011-06-10 19:41:35 UTC (rev 909)
@@ -569,6 +569,14 @@
 			}
 
 		}
+		
+		//check to see if the NewickString has a semicolon in it
+		String newWick = getNewickString();
+		
+		if (newWick.indexOf(';') == -1) {
+			newWick.concat(";");
+		}
+		
 		pBuilder.append(getNewickString()).append("\n");
 		pBuilder.append("[!  TreeBASE tree URI: ").append(getPhyloWSPath().getPurl()).append("]\n");
 


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